use of org.hl7.fhir.r4b.terminologies.CodeSystemUtilities.CodeSystemNavigator in project org.hl7.fhir.core by hapifhir.
the class CodeSystemRenderer method generateCodeSystemContent.
private boolean generateCodeSystemContent(XhtmlNode x, CodeSystem cs, boolean hasExtensions, List<UsedConceptMap> maps) throws FHIRFormatError, DefinitionException, IOException {
XhtmlNode p = x.para();
if (cs.getContent() == CodeSystemContentMode.COMPLETE)
p.tx(getContext().getWorker().translator().translateAndFormat("xhtml-gen-cs", getContext().getLang(), "This code system %s defines the following codes", cs.getUrl()) + ":");
else if (cs.getContent() == CodeSystemContentMode.EXAMPLE)
p.tx(getContext().getWorker().translator().translateAndFormat("xhtml-gen-cs", getContext().getLang(), "This code system %s defines some example codes", cs.getUrl()) + ":");
else if (cs.getContent() == CodeSystemContentMode.FRAGMENT)
p.tx(getContext().getWorker().translator().translateAndFormat("xhtml-gen-cs", getContext().getLang(), "This code system %s defines many codes, of which the following are a subset", cs.getUrl()) + ":");
else if (cs.getContent() == CodeSystemContentMode.NOTPRESENT) {
p.tx(getContext().getWorker().translator().translateAndFormat("xhtml-gen-cs", getContext().getLang(), "This code system %s defines many codes, but they are not represented here", cs.getUrl()));
return false;
}
XhtmlNode t = x.table("codes");
boolean definitions = false;
boolean commentS = false;
boolean deprecated = false;
boolean display = false;
boolean hierarchy = false;
boolean version = false;
boolean ignoreStatus = false;
boolean isSupplement = cs.getContent() == CodeSystemContentMode.SUPPLEMENT;
List<PropertyComponent> properties = new ArrayList<>();
for (PropertyComponent cp : cs.getProperty()) {
if (showPropertyInTable(cp)) {
boolean exists = false;
for (ConceptDefinitionComponent c : cs.getConcept()) {
exists = exists || conceptsHaveProperty(c, cp);
}
if (exists) {
properties.add(cp);
if ("status".equals(cp.getCode())) {
ignoreStatus = true;
}
}
}
}
for (ConceptDefinitionComponent c : cs.getConcept()) {
commentS = commentS || conceptsHaveComments(c);
deprecated = deprecated || conceptsHaveDeprecated(cs, c, ignoreStatus);
display = display || conceptsHaveDisplay(c);
version = version || conceptsHaveVersion(c);
hierarchy = hierarchy || c.hasConcept();
definitions = definitions || conceptsHaveDefinition(c);
}
CodeSystemNavigator csNav = new CodeSystemNavigator(cs);
hierarchy = hierarchy || csNav.isRestructure();
List<String> langs = new ArrayList<>();
addMapHeaders(addTableHeaderRowStandard(t, hierarchy, display, definitions, commentS, version, deprecated, properties, null, false), maps);
for (ConceptDefinitionComponent c : csNav.getConcepts(null)) {
hasExtensions = addDefineRowToTable(t, c, 0, hierarchy, display, definitions, commentS, version, deprecated, maps, cs.getUrl(), cs, properties, csNav, langs, isSupplement) || hasExtensions;
}
if (langs.size() > 0) {
Collections.sort(langs);
x.para().b().tx("Additional Language Displays");
t = x.table("codes");
XhtmlNode tr = t.tr();
tr.td().b().tx("Code");
for (String lang : langs) tr.td().b().addText(describeLang(lang));
for (ConceptDefinitionComponent c : cs.getConcept()) {
addLanguageRow(c, t, langs);
}
}
return hasExtensions;
}
use of org.hl7.fhir.r4b.terminologies.CodeSystemUtilities.CodeSystemNavigator in project org.hl7.fhir.core by hapifhir.
the class CodeSystemRenderer method addDefineRowToTable.
private boolean addDefineRowToTable(XhtmlNode t, ConceptDefinitionComponent c, int level, boolean hasHierarchy, boolean hasDisplay, boolean hasDefinitions, boolean comment, boolean version, boolean deprecated, List<UsedConceptMap> maps, String system, CodeSystem cs, List<PropertyComponent> properties, CodeSystemNavigator csNav, List<String> langs, boolean isSupplement) throws FHIRFormatError, DefinitionException, IOException {
boolean hasExtensions = false;
XhtmlNode tr = t.tr();
XhtmlNode td = tr.td();
if (hasHierarchy) {
td.addText(Integer.toString(level + 1));
td = tr.td();
String s = Utilities.padLeft("", '\u00A0', level * 2);
td.addText(s);
}
String link = isSupplement ? getLinkForCode(cs.getSupplements(), null, c.getCode()) : null;
if (link != null) {
td.ah(link).attribute("style", "white-space:nowrap").addText(c.getCode());
} else {
td.attribute("style", "white-space:nowrap").addText(c.getCode());
}
XhtmlNode a;
if (c.hasCodeElement()) {
td.an(cs.getId() + "-" + Utilities.nmtokenize(c.getCode()));
}
for (ConceptDefinitionDesignationComponent cd : c.getDesignation()) {
if (cd.hasLanguage() && !langs.contains(cd.getLanguage()) && (!cs.hasLanguage() || !cs.getLanguage().equals(cd.getLanguage()))) {
langs.add(cd.getLanguage());
}
}
if (hasDisplay) {
td = tr.td();
renderDisplayName(c, cs, td);
}
if (hasDefinitions) {
td = tr.td();
if (c != null && c.hasDefinitionElement()) {
if (getContext().getLang() == null) {
if (hasMarkdownInDefinitions(cs))
addMarkdown(td, c.getDefinition());
else
td.addText(c.getDefinition());
} else if (getContext().getLang().equals("*")) {
boolean sl = false;
for (ConceptDefinitionDesignationComponent cd : c.getDesignation()) if (cd.getUse().is("http://terminology.hl7.org/CodeSystem/designation-usage", "definition") && cd.hasLanguage() && !c.getDefinition().equalsIgnoreCase(cd.getValue()))
sl = true;
td.addText((sl ? cs.getLanguage("en") + ": " : "") + c.getDefinition());
for (ConceptDefinitionDesignationComponent cd : c.getDesignation()) {
if (cd.getUse().is("http://terminology.hl7.org/CodeSystem/designation-usage", "definition") && cd.hasLanguage() && !c.getDefinition().equalsIgnoreCase(cd.getValue())) {
td.br();
td.addText(cd.getLanguage() + ": " + cd.getValue());
}
}
} else if (getContext().getLang().equals(cs.getLanguage()) || (getContext().getLang().equals("en") && !cs.hasLanguage())) {
td.addText(c.getDefinition());
} else {
for (ConceptDefinitionDesignationComponent cd : c.getDesignation()) {
if (cd.getUse().is("http://terminology.hl7.org/CodeSystem/designation-usage", "definition") && cd.hasLanguage() && cd.getLanguage().equals(getContext().getLang())) {
td.addText(cd.getValue());
}
}
}
}
}
if (deprecated) {
td = tr.td();
Boolean b = CodeSystemUtilities.isDeprecated(cs, c, false);
if (b != null && b) {
smartAddText(td, getContext().getWorker().translator().translate("xhtml-gen-cs", "Deprecated", getContext().getLang()));
hasExtensions = true;
if (ToolingExtensions.hasExtension(c, ToolingExtensions.EXT_REPLACED_BY)) {
Coding cc = (Coding) ToolingExtensions.getExtension(c, ToolingExtensions.EXT_REPLACED_BY).getValue();
td.tx(" (replaced by ");
String url = getCodingReference(cc, system);
if (url != null) {
td.ah(url).addText(cc.getCode());
td.tx(": " + cc.getDisplay() + ")");
} else
td.addText(cc.getCode() + " '" + cc.getDisplay() + "' in " + cc.getSystem() + ")");
}
}
}
if (comment) {
td = tr.td();
Extension ext = c.getExtensionByUrl(ToolingExtensions.EXT_CS_COMMENT);
if (ext != null) {
hasExtensions = true;
String bc = ext.hasValue() ? ext.getValue().primitiveValue() : null;
Map<String, String> translations = ToolingExtensions.getLanguageTranslations(ext.getValue());
if (getContext().getLang() == null) {
if (bc != null)
td.addText(bc);
} else if (getContext().getLang().equals("*")) {
boolean sl = false;
for (String l : translations.keySet()) if (bc == null || !bc.equalsIgnoreCase(translations.get(l)))
sl = true;
if (bc != null) {
td.addText((sl ? cs.getLanguage("en") + ": " : "") + bc);
}
for (String l : translations.keySet()) {
if (bc == null || !bc.equalsIgnoreCase(translations.get(l))) {
if (!td.getChildNodes().isEmpty())
td.br();
td.addText(l + ": " + translations.get(l));
}
}
} else if (getContext().getLang().equals(cs.getLanguage()) || (getContext().getLang().equals("en") && !cs.hasLanguage())) {
if (bc != null)
td.addText(bc);
} else {
if (bc != null)
translations.put(cs.getLanguage("en"), bc);
for (String l : translations.keySet()) {
if (l.equals(getContext().getLang())) {
td.addText(translations.get(l));
}
}
}
}
}
if (version) {
td = tr.td();
if (c.hasUserData("cs.version.notes"))
td.addText(c.getUserString("cs.version.notes"));
}
if (properties != null) {
for (PropertyComponent pc : properties) {
td = tr.td();
boolean first = true;
List<ConceptPropertyComponent> pcvl = CodeSystemUtilities.getPropertyValues(c, pc.getCode());
for (ConceptPropertyComponent pcv : pcvl) {
if (pcv.hasValue()) {
if (first)
first = false;
else
td.addText(", ");
if (pcv.hasValueCoding()) {
td.addText(pcv.getValueCoding().getCode());
} else if (pcv.hasValueStringType() && Utilities.isAbsoluteUrlLinkable(pcv.getValue().primitiveValue())) {
td.ah(pcv.getValue().primitiveValue()).tx(pcv.getValue().primitiveValue());
} else {
td.addText(pcv.getValue().primitiveValue());
}
}
}
}
}
for (UsedConceptMap m : maps) {
td = tr.td();
List<TargetElementComponentWrapper> mappings = findMappingsForCode(c.getCode(), m.getMap());
boolean first = true;
for (TargetElementComponentWrapper mapping : mappings) {
if (!first)
td.br();
first = false;
XhtmlNode span = td.span(null, mapping.comp.hasRelationship() ? mapping.comp.getRelationship().toCode() : "");
span.addText(getCharForRelationship(mapping.comp));
a = td.ah(getContext().getSpecificationLink() + m.getLink() + "#" + makeAnchor(mapping.group.getTarget(), mapping.comp.getCode()));
a.addText(mapping.comp.getCode());
if (!Utilities.noString(mapping.comp.getComment()))
td.i().tx("(" + mapping.comp.getComment() + ")");
}
}
List<ConceptDefinitionComponent> ocl = csNav.getOtherChildren(c);
for (ConceptDefinitionComponent cc : csNav.getConcepts(c)) {
hasExtensions = addDefineRowToTable(t, cc, level + 1, hasHierarchy, hasDisplay, hasDefinitions, comment, version, deprecated, maps, system, cs, properties, csNav, langs, isSupplement) || hasExtensions;
}
for (ConceptDefinitionComponent cc : ocl) {
tr = t.tr();
td = tr.td();
td.addText(Integer.toString(level + 2));
td = tr.td();
String s = Utilities.padLeft("", '\u00A0', (level + 1) * 2);
td.addText(s);
td.attribute("style", "white-space:nowrap");
a = td.ah("#" + cs.getId() + "-" + Utilities.nmtokenize(cc.getCode()));
a.addText(cc.getCode());
if (hasDisplay) {
td = tr.td();
renderDisplayName(cc, cs, td);
}
int w = 1 + (deprecated ? 1 : 0) + (comment ? 1 : 0) + (version ? 1 : 0) + maps.size();
if (properties != null) {
w = w + properties.size();
}
td = tr.td().colspan(Integer.toString(w));
}
return hasExtensions;
}
use of org.hl7.fhir.r4b.terminologies.CodeSystemUtilities.CodeSystemNavigator in project org.hl7.fhir.core by hapifhir.
the class CodeSystemRenderer method addDefineRowToTable.
private boolean addDefineRowToTable(XhtmlNode t, ConceptDefinitionComponent c, int level, boolean hasHierarchy, boolean hasDisplay, boolean hasDefinitions, boolean comment, boolean version, boolean deprecated, List<UsedConceptMap> maps, String system, CodeSystem cs, List<PropertyComponent> properties, CodeSystemNavigator csNav, List<String> langs, boolean isSupplement) throws FHIRFormatError, DefinitionException, IOException {
boolean hasExtensions = false;
XhtmlNode tr = t.tr();
XhtmlNode td = tr.td();
if (hasHierarchy) {
td.addText(Integer.toString(level + 1));
td = tr.td();
String s = Utilities.padLeft("", '\u00A0', level * 2);
td.addText(s);
}
String link = isSupplement ? getLinkForCode(cs.getSupplements(), null, c.getCode()) : null;
if (link != null) {
td.ah(link).attribute("style", "white-space:nowrap").addText(c.getCode());
} else {
td.attribute("style", "white-space:nowrap").addText(c.getCode());
}
XhtmlNode a;
if (c.hasCodeElement()) {
td.an(cs.getId() + "-" + Utilities.nmtokenize(c.getCode()));
}
for (ConceptDefinitionDesignationComponent cd : c.getDesignation()) {
if (cd.hasLanguage() && !langs.contains(cd.getLanguage()) && (!cs.hasLanguage() || !cs.getLanguage().equals(cd.getLanguage()))) {
langs.add(cd.getLanguage());
}
}
if (hasDisplay) {
td = tr.td();
renderDisplayName(c, cs, td);
}
if (hasDefinitions) {
td = tr.td();
if (c != null && c.hasDefinitionElement()) {
if (getContext().getLang() == null) {
if (hasMarkdownInDefinitions(cs))
addMarkdown(td, c.getDefinition());
else
td.addText(c.getDefinition());
} else if (getContext().getLang().equals("*")) {
boolean sl = false;
for (ConceptDefinitionDesignationComponent cd : c.getDesignation()) if (cd.getUse().is("http://terminology.hl7.org/CodeSystem/designation-usage", "definition") && cd.hasLanguage() && !c.getDefinition().equalsIgnoreCase(cd.getValue()))
sl = true;
td.addText((sl ? cs.getLanguage("en") + ": " : "") + c.getDefinition());
for (ConceptDefinitionDesignationComponent cd : c.getDesignation()) {
if (cd.getUse().is("http://terminology.hl7.org/CodeSystem/designation-usage", "definition") && cd.hasLanguage() && !c.getDefinition().equalsIgnoreCase(cd.getValue())) {
td.br();
td.addText(cd.getLanguage() + ": " + cd.getValue());
}
}
} else if (getContext().getLang().equals(cs.getLanguage()) || (getContext().getLang().equals("en") && !cs.hasLanguage())) {
td.addText(c.getDefinition());
} else {
for (ConceptDefinitionDesignationComponent cd : c.getDesignation()) {
if (cd.getUse().is("http://terminology.hl7.org/CodeSystem/designation-usage", "definition") && cd.hasLanguage() && cd.getLanguage().equals(getContext().getLang())) {
td.addText(cd.getValue());
}
}
}
}
}
if (deprecated) {
td = tr.td();
Boolean b = CodeSystemUtilities.isDeprecated(cs, c, false);
if (b != null && b) {
smartAddText(td, getContext().getWorker().translator().translate("xhtml-gen-cs", "Deprecated", getContext().getLang()));
hasExtensions = true;
if (ToolingExtensions.hasExtension(c, ToolingExtensions.EXT_REPLACED_BY)) {
Coding cc = (Coding) ToolingExtensions.getExtension(c, ToolingExtensions.EXT_REPLACED_BY).getValue();
td.tx(" (replaced by ");
String url = getCodingReference(cc, system);
if (url != null) {
td.ah(url).addText(cc.getCode());
td.tx(": " + cc.getDisplay() + ")");
} else
td.addText(cc.getCode() + " '" + cc.getDisplay() + "' in " + cc.getSystem() + ")");
}
}
}
if (comment) {
td = tr.td();
Extension ext = c.getExtensionByUrl(ToolingExtensions.EXT_CS_COMMENT);
if (ext != null) {
hasExtensions = true;
String bc = ext.hasValue() ? ext.getValue().primitiveValue() : null;
Map<String, String> translations = ToolingExtensions.getLanguageTranslations(ext.getValue());
if (getContext().getLang() == null) {
if (bc != null)
td.addText(bc);
} else if (getContext().getLang().equals("*")) {
boolean sl = false;
for (String l : translations.keySet()) if (bc == null || !bc.equalsIgnoreCase(translations.get(l)))
sl = true;
if (bc != null) {
td.addText((sl ? cs.getLanguage("en") + ": " : "") + bc);
}
for (String l : translations.keySet()) {
if (bc == null || !bc.equalsIgnoreCase(translations.get(l))) {
if (!td.getChildNodes().isEmpty())
td.br();
td.addText(l + ": " + translations.get(l));
}
}
} else if (getContext().getLang().equals(cs.getLanguage()) || (getContext().getLang().equals("en") && !cs.hasLanguage())) {
if (bc != null)
td.addText(bc);
} else {
if (bc != null)
translations.put(cs.getLanguage("en"), bc);
for (String l : translations.keySet()) {
if (l.equals(getContext().getLang())) {
td.addText(translations.get(l));
}
}
}
}
}
if (version) {
td = tr.td();
if (c.hasUserData("cs.version.notes"))
td.addText(c.getUserString("cs.version.notes"));
}
if (properties != null) {
for (PropertyComponent pc : properties) {
td = tr.td();
boolean first = true;
List<ConceptPropertyComponent> pcvl = CodeSystemUtilities.getPropertyValues(c, pc.getCode());
for (ConceptPropertyComponent pcv : pcvl) {
if (pcv.hasValue()) {
if (first)
first = false;
else
td.addText(", ");
if (pcv.hasValueCoding()) {
td.addText(pcv.getValueCoding().getCode());
} else if (pcv.hasValueStringType() && Utilities.isAbsoluteUrlLinkable(pcv.getValue().primitiveValue())) {
td.ah(pcv.getValue().primitiveValue()).tx(pcv.getValue().primitiveValue());
} else {
td.addText(pcv.getValue().primitiveValue());
}
}
}
}
}
for (UsedConceptMap m : maps) {
td = tr.td();
List<TargetElementComponentWrapper> mappings = findMappingsForCode(c.getCode(), m.getMap());
boolean first = true;
for (TargetElementComponentWrapper mapping : mappings) {
if (!first)
td.br();
first = false;
XhtmlNode span = td.span(null, mapping.comp.hasEquivalence() ? mapping.comp.getEquivalence().toCode() : "");
span.addText(getCharForRelationship(mapping.comp));
a = td.ah(getContext().getSpecificationLink() + m.getLink() + "#" + makeAnchor(mapping.group.getTarget(), mapping.comp.getCode()));
a.addText(mapping.comp.getCode());
if (!Utilities.noString(mapping.comp.getComment()))
td.i().tx("(" + mapping.comp.getComment() + ")");
}
}
List<ConceptDefinitionComponent> ocl = csNav.getOtherChildren(c);
for (ConceptDefinitionComponent cc : csNav.getConcepts(c)) {
hasExtensions = addDefineRowToTable(t, cc, level + 1, hasHierarchy, hasDisplay, hasDefinitions, comment, version, deprecated, maps, system, cs, properties, csNav, langs, isSupplement) || hasExtensions;
}
for (ConceptDefinitionComponent cc : ocl) {
tr = t.tr();
td = tr.td();
td.addText(Integer.toString(level + 2));
td = tr.td();
String s = Utilities.padLeft("", '\u00A0', (level + 1) * 2);
td.addText(s);
td.attribute("style", "white-space:nowrap");
a = td.ah("#" + cs.getId() + "-" + Utilities.nmtokenize(cc.getCode()));
a.addText(cc.getCode());
if (hasDisplay) {
td = tr.td();
renderDisplayName(cc, cs, td);
}
int w = 1 + (deprecated ? 1 : 0) + (comment ? 1 : 0) + (version ? 1 : 0) + maps.size();
if (properties != null) {
w = w + properties.size();
}
td = tr.td().colspan(Integer.toString(w));
}
return hasExtensions;
}
use of org.hl7.fhir.r4b.terminologies.CodeSystemUtilities.CodeSystemNavigator in project org.hl7.fhir.core by hapifhir.
the class CodeSystemRenderer method generateCodeSystemContent.
private boolean generateCodeSystemContent(XhtmlNode x, CodeSystem cs, boolean hasExtensions, List<UsedConceptMap> maps) throws FHIRFormatError, DefinitionException, IOException {
XhtmlNode p = x.para();
if (cs.getContent() == CodeSystemContentMode.COMPLETE)
p.tx(getContext().getWorker().translator().translateAndFormat("xhtml-gen-cs", getContext().getLang(), "This code system %s defines the following codes", cs.getUrl()) + ":");
else if (cs.getContent() == CodeSystemContentMode.EXAMPLE)
p.tx(getContext().getWorker().translator().translateAndFormat("xhtml-gen-cs", getContext().getLang(), "This code system %s defines some example codes", cs.getUrl()) + ":");
else if (cs.getContent() == CodeSystemContentMode.FRAGMENT)
p.tx(getContext().getWorker().translator().translateAndFormat("xhtml-gen-cs", getContext().getLang(), "This code system %s defines many codes, of which the following are a subset", cs.getUrl()) + ":");
else if (cs.getContent() == CodeSystemContentMode.NOTPRESENT) {
p.tx(getContext().getWorker().translator().translateAndFormat("xhtml-gen-cs", getContext().getLang(), "This code system %s defines many codes, but they are not represented here", cs.getUrl()));
return false;
}
XhtmlNode t = x.table("codes");
boolean definitions = false;
boolean commentS = false;
boolean deprecated = false;
boolean display = false;
boolean hierarchy = false;
boolean version = false;
boolean ignoreStatus = false;
boolean isSupplement = cs.getContent() == CodeSystemContentMode.SUPPLEMENT;
List<PropertyComponent> properties = new ArrayList<>();
for (PropertyComponent cp : cs.getProperty()) {
if (showPropertyInTable(cp)) {
boolean exists = false;
for (ConceptDefinitionComponent c : cs.getConcept()) {
exists = exists || conceptsHaveProperty(c, cp);
}
if (exists) {
properties.add(cp);
if ("status".equals(cp.getCode())) {
ignoreStatus = true;
}
}
}
}
for (ConceptDefinitionComponent c : cs.getConcept()) {
commentS = commentS || conceptsHaveComments(c);
deprecated = deprecated || conceptsHaveDeprecated(cs, c, ignoreStatus);
display = display || conceptsHaveDisplay(c);
version = version || conceptsHaveVersion(c);
hierarchy = hierarchy || c.hasConcept();
definitions = definitions || conceptsHaveDefinition(c);
}
CodeSystemNavigator csNav = new CodeSystemNavigator(cs);
hierarchy = hierarchy || csNav.isRestructure();
List<String> langs = new ArrayList<>();
addMapHeaders(addTableHeaderRowStandard(t, hierarchy, display, definitions, commentS, version, deprecated, properties, null, null, false), maps);
for (ConceptDefinitionComponent c : csNav.getConcepts(null)) {
hasExtensions = addDefineRowToTable(t, c, 0, hierarchy, display, definitions, commentS, version, deprecated, maps, cs.getUrl(), cs, properties, csNav, langs, isSupplement) || hasExtensions;
}
if (langs.size() > 0) {
Collections.sort(langs);
x.para().b().tx("Additional Language Displays");
t = x.table("codes");
XhtmlNode tr = t.tr();
tr.td().b().tx("Code");
for (String lang : langs) tr.td().b().addText(describeLang(lang));
for (ConceptDefinitionComponent c : cs.getConcept()) {
addLanguageRow(c, t, langs);
}
}
return hasExtensions;
}
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