Examples with ValueSetComparison org.hl7.fhir.r5.comparison.ValueSetComparer.ValueSetComparison used on opensource projects

Example 16 with ValueSetComparison

use of org.hl7.fhir.r5.comparison.ValueSetComparer.ValueSetComparison in project org.hl7.fhir.core by hapifhir.

the class ComparisonRenderer method renderValueSet.

private void renderValueSet(String id, ValueSetComparison comp) throws FHIRException, IOException {
    String template = templates.get("ValueSet");
    Map<String, Base> vars = new HashMap<>();
    ValueSetComparer cs = new ValueSetComparer(session);
    vars.put("left", new StringType(comp.getLeft().present()));
    vars.put("right", new StringType(comp.getRight().present()));
    vars.put("leftId", new StringType(comp.getLeft().getId()));
    vars.put("rightId", new StringType(comp.getRight().getId()));
    vars.put("leftUrl", new StringType(comp.getLeft().getUrl()));
    vars.put("rightUrl", new StringType(comp.getRight().getUrl()));
    vars.put("errors", new StringType(new XhtmlComposer(true).compose(cs.renderErrors(comp))));
    vars.put("metadata", new StringType(new XhtmlComposer(true).compose(cs.renderMetadata(comp, "", ""))));
    vars.put("compose", new StringType(new XhtmlComposer(true).compose(cs.renderCompose(comp, "", ""))));
    vars.put("expansion", new StringType(new XhtmlComposer(true).compose(cs.renderExpansion(comp, "", ""))));
    String cnt = processTemplate(template, "ValueSet", vars);
    TextFile.stringToFile(cnt, file(comp.getId() + ".html"));
    new org.hl7.fhir.r4b.formats.JsonParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(Utilities.path(folder, comp.getId() + "-union.json")), comp.getUnion());
    new org.hl7.fhir.r4b.formats.JsonParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(Utilities.path(folder, comp.getId() + "-intersection.json")), comp.getIntersection());
}

Example 17 with ValueSetComparison

use of org.hl7.fhir.r5.comparison.ValueSetComparer.ValueSetComparison in project org.hl7.fhir.core by hapifhir.

the class ValueSetComparer method renderExpansion.

public XhtmlNode renderExpansion(ValueSetComparison csc, String id, String prefix) throws IOException {
    if (csc.getExpansion() == null) {
        XhtmlNode p = new XhtmlNode(NodeType.Element, "p");
        p.tx("Unable to generate expansion - see errors");
        return p;
    }
    if (csc.getExpansion().getChildren().isEmpty()) {
        XhtmlNode p = new XhtmlNode(NodeType.Element, "p");
        p.tx("Expansion is empty");
        return p;
    }
    // columns: code(+system), version, display , abstract, inactive,
    boolean hasSystem = csc.getExpansion().getChildren().isEmpty() ? false : getSystemVaries(csc.getExpansion(), csc.getExpansion().getChildren().get(0).either().getSystem());
    boolean hasVersion = findVersion(csc.getExpansion());
    boolean hasAbstract = findAbstract(csc.getExpansion());
    boolean hasInactive = findInactive(csc.getExpansion());
    HierarchicalTableGenerator gen = new HierarchicalTableGenerator(Utilities.path("[tmp]", "comparison"), false);
    TableModel model = gen.new TableModel(id, true);
    model.setAlternating(true);
    if (hasSystem) {
        model.getTitles().add(gen.new Title(null, null, "System", "The code for the concept", null, 100));
    }
    model.getTitles().add(gen.new Title(null, null, "Code", "The system for the concept", null, 100));
    model.getTitles().add(gen.new Title(null, null, "Display", "The display for the concept", null, 200, 2));
    // if (hasVersion) {
    // model.getTitles().add(gen.new Title(null, null, "Version", "The version for the concept", null, 200, 2));
    // }
    // if (hasAbstract) {
    // model.getTitles().add(gen.new Title(null, null, "Abstract", "The abstract flag for the concept", null, 200, 2));
    // }
    // if (hasInactive) {
    // model.getTitles().add(gen.new Title(null, null, "Inactive", "The inactive flag for the concept", null, 200, 2));
    // }
    model.getTitles().add(gen.new Title(null, null, "Comments", "Additional information about the comparison", null, 200));
    for (StructuralMatch<ValueSetExpansionContainsComponent> t : csc.getExpansion().getChildren()) {
        addExpansionRow(gen, model.getRows(), t, hasSystem, hasVersion, hasAbstract, hasInactive);
    }
    return gen.generate(model, prefix, 0, null);
}

Example 18 with ValueSetComparison

use of org.hl7.fhir.r5.comparison.ValueSetComparer.ValueSetComparison in project org.hl7.fhir.core by hapifhir.

the class ValueSetComparer method compareConcepts.

private void compareConcepts(List<ValueSetExpansionContainsComponent> left, List<ValueSetExpansionContainsComponent> right, StructuralMatch<ValueSetExpansionContainsComponent> combined, List<ValueSetExpansionContainsComponent> union, List<ValueSetExpansionContainsComponent> intersection, String path, ValueSetComparison res) {
    List<ValueSetExpansionContainsComponent> matchR = new ArrayList<>();
    for (ValueSetExpansionContainsComponent l : left) {
        ValueSetExpansionContainsComponent r = findInList(right, l);
        if (r == null) {
            union.add(l);
            combined.getChildren().add(new StructuralMatch<ValueSetExpansionContainsComponent>(l, vmI(IssueSeverity.INFORMATION, "Removed from expansion", path)));
        } else {
            matchR.add(r);
            ValueSetExpansionContainsComponent ccU = merge(l, r);
            ValueSetExpansionContainsComponent ccI = intersect(l, r);
            union.add(ccU);
            intersection.add(ccI);
            StructuralMatch<ValueSetExpansionContainsComponent> sm = new StructuralMatch<ValueSetExpansionContainsComponent>(l, r);
            compareItem(sm.getMessages(), path, l, r, res);
            combined.getChildren().add(sm);
            compareConcepts(l.getContains(), r.getContains(), sm, ccU.getContains(), ccI.getContains(), path + ".where(code = '" + l.getCode() + "').contains", res);
        }
    }
    for (ValueSetExpansionContainsComponent r : right) {
        if (!matchR.contains(r)) {
            union.add(r);
            combined.getChildren().add(new StructuralMatch<ValueSetExpansionContainsComponent>(vmI(IssueSeverity.INFORMATION, "Added to expansion", path), r));
        }
    }
}

Example 19 with ValueSetComparison

use of org.hl7.fhir.r5.comparison.ValueSetComparer.ValueSetComparison in project org.hl7.fhir.core by hapifhir.

the class ValueSetComparer method compare.

public ValueSetComparison compare(ValueSet left, ValueSet right) {
    if (left == null)
        throw new DefinitionException("No ValueSet provided (left)");
    if (right == null)
        throw new DefinitionException("No ValueSet provided (right)");
    ValueSetComparison res = new ValueSetComparison(left, right);
    session.identify(res);
    ValueSet vs = new ValueSet();
    res.setUnion(vs);
    session.identify(vs);
    vs.setName("Union" + left.getName() + "And" + right.getName());
    vs.setTitle("Union of " + left.getTitle() + " And " + right.getTitle());
    vs.setStatus(left.getStatus());
    vs.setDate(new Date());
    ValueSet vs1 = new ValueSet();
    res.setIntersection(vs1);
    session.identify(vs1);
    vs1.setName("Intersection" + left.getName() + "And" + right.getName());
    vs1.setTitle("Intersection of " + left.getTitle() + " And " + right.getTitle());
    vs1.setStatus(left.getStatus());
    vs1.setDate(new Date());
    compareMetadata(left, right, res.getMetadata(), res);
    comparePrimitives("immutable", left.getImmutableElement(), right.getImmutableElement(), res.getMetadata(), IssueSeverity.WARNING, res);
    if (left.hasCompose() || right.hasCompose()) {
        comparePrimitives("compose.lockedDate", left.getCompose().getLockedDateElement(), right.getCompose().getLockedDateElement(), res.getMetadata(), IssueSeverity.WARNING, res);
        comparePrimitives("compose.inactive", left.getCompose().getInactiveElement(), right.getCompose().getInactiveElement(), res.getMetadata(), IssueSeverity.WARNING, res);
    }
    compareCompose(left.getCompose(), right.getCompose(), res, res.getUnion().getCompose(), res.getIntersection().getCompose());
    compareExpansions(left, right, res);
    return res;
}

Example 20 with ValueSetComparison

use of org.hl7.fhir.r5.comparison.ValueSetComparer.ValueSetComparison in project org.hl7.fhir.core by hapifhir.

the class ValueSetComparer method compareExpansions.

private void compareExpansions(ValueSet left, ValueSet right, ValueSetComparison res) {
    ValueSet expL = left.hasExpansion() ? left : expand(left, res, "left", session.getContextLeft());
    ValueSet expR = right.hasExpansion() ? right : expand(right, res, "right", session.getContextRight());
    if (expL != null && expR != null) {
        // ignore the parameters for now
        compareConcepts(expL.getExpansion().getContains(), expR.getExpansion().getContains(), res.forceExpansion(), res.getUnion().getExpansion().getContains(), res.getIntersection().getExpansion().getContains(), "ValueSet.expansion.contains", res);
    }
}