Examples with RdfParser org.hl7.fhir.r5.formats.RdfParser used on opensource projects

Example 6 with RdfParser

use of org.hl7.fhir.r5.formats.RdfParser in project org.hl7.fhir.core by hapifhir.

the class ToolsHelper method executeJson.

public String executeJson(String[] args) throws IOException, FHIRException {
    FileInputStream in;
    File source = new CSFile(args[1]);
    File dest = new CSFile(args[2]);
    File destc = new CSFile(Utilities.changeFileExt(args[2], ".canonical.json"));
    File destt = new CSFile(args[2] + ".tmp");
    File destr = new CSFile(Utilities.changeFileExt(args[2], ".ttl"));
    if (!source.exists())
        throw new FHIRException("Source File \"" + source.getAbsolutePath() + "\" not found");
    in = new CSFileInputStream(source);
    XmlParser p = new XmlParser();
    Resource rf = p.parse(in);
    JsonParser json = new JsonParser();
    json.setOutputStyle(OutputStyle.PRETTY);
    FileOutputStream s = new FileOutputStream(dest);
    json.compose(s, rf);
    s.close();
    json.setOutputStyle(OutputStyle.CANONICAL);
    s = new FileOutputStream(destc);
    json.compose(s, rf);
    s.close();
    json.setSuppressXhtml("Snipped for Brevity");
    json.setOutputStyle(OutputStyle.PRETTY);
    s = new FileOutputStream(destt);
    json.compose(s, rf);
    s.close();
    RdfParserBase rdf = new RdfParser();
    s = new FileOutputStream(destr);
    rdf.compose(s, rf);
    s.close();
    return TextFile.fileToString(destt.getAbsolutePath());
}

Example 7 with RdfParser

use of org.hl7.fhir.r5.formats.RdfParser in project org.hl7.fhir.core by hapifhir.

the class ToolsHelper method processExamples.

public void processExamples(String rootDir, Collection<String> list) throws FHIRException {
    for (String n : list) {
        try {
            String filename = rootDir + n + ".xml";
            // 1. produce canonical XML
            CSFileInputStream source = new CSFileInputStream(filename);
            FileOutputStream dest = new FileOutputStream(Utilities.changeFileExt(filename, ".canonical.xml"));
            XmlParser p = new XmlParser();
            Resource r = p.parse(source);
            XmlParser cxml = new XmlParser();
            cxml.setOutputStyle(OutputStyle.CANONICAL);
            cxml.compose(dest, r);
            // 2. produce JSON
            source = new CSFileInputStream(filename);
            dest = new FileOutputStream(Utilities.changeFileExt(filename, ".json"));
            r = p.parse(source);
            JsonParser json = new JsonParser();
            json.setOutputStyle(OutputStyle.PRETTY);
            json.compose(dest, r);
            json = new JsonParser();
            json.setOutputStyle(OutputStyle.CANONICAL);
            dest = new FileOutputStream(Utilities.changeFileExt(filename, ".canonical.json"));
            json.compose(dest, r);
            // 2. produce JSON
            dest = new FileOutputStream(Utilities.changeFileExt(filename, ".ttl"));
            RdfParserBase rdf = new RdfParser();
            rdf.compose(dest, r);
        } catch (Exception e) {
            e.printStackTrace();
            throw new FHIRException("Error Processing " + n + ".xml: " + e.getMessage(), e);
        }
    }
}

Example 8 with RdfParser

use of org.hl7.fhir.r5.formats.RdfParser in project org.hl7.fhir.core by hapifhir.

the class ToolsHelper method executeJson.

public String executeJson(String[] args) throws IOException, FHIRException {
    FileInputStream in;
    File source = new CSFile(args[1]);
    File dest = new CSFile(args[2]);
    File destc = new CSFile(Utilities.changeFileExt(args[2], ".canonical.json"));
    File destt = new CSFile(args[2] + ".tmp");
    File destr = new CSFile(Utilities.changeFileExt(args[2], ".ttl"));
    if (!source.exists())
        throw new FHIRException("Source File \"" + source.getAbsolutePath() + "\" not found");
    in = new CSFileInputStream(source);
    XmlParser p = new XmlParser();
    Resource rf = p.parse(in);
    JsonParser json = new JsonParser();
    json.setOutputStyle(OutputStyle.PRETTY);
    FileOutputStream s = new FileOutputStream(dest);
    json.compose(s, rf);
    s.close();
    json.setOutputStyle(OutputStyle.CANONICAL);
    s = new FileOutputStream(destc);
    json.compose(s, rf);
    s.close();
    json.setSuppressXhtml("Snipped for Brevity");
    json.setOutputStyle(OutputStyle.PRETTY);
    s = new FileOutputStream(destt);
    json.compose(s, rf);
    s.close();
    RdfParserBase rdf = new RdfParser();
    s = new FileOutputStream(destr);
    rdf.compose(s, rf);
    s.close();
    return TextFile.fileToString(destt.getAbsolutePath());
}

Example 9 with RdfParser

use of org.hl7.fhir.r5.formats.RdfParser in project org.hl7.fhir.core by hapifhir.

the class ToolsHelper method processExamples.

public void processExamples(String rootDir, Collection<String> list) throws FHIRException {
    for (String n : list) {
        try {
            String filename = rootDir + n + ".xml";
            // 1. produce canonical XML
            CSFileInputStream source = new CSFileInputStream(filename);
            FileOutputStream dest = new FileOutputStream(Utilities.changeFileExt(filename, ".canonical.xml"));
            XmlParser p = new XmlParser();
            Resource r = p.parse(source);
            XmlParser cxml = new XmlParser();
            cxml.setOutputStyle(OutputStyle.CANONICAL);
            cxml.compose(dest, r);
            // 2. produce JSON
            source = new CSFileInputStream(filename);
            dest = new FileOutputStream(Utilities.changeFileExt(filename, ".json"));
            r = p.parse(source);
            JsonParser json = new JsonParser();
            json.setOutputStyle(OutputStyle.PRETTY);
            json.compose(dest, r);
            json = new JsonParser();
            json.setOutputStyle(OutputStyle.CANONICAL);
            dest = new FileOutputStream(Utilities.changeFileExt(filename, ".canonical.json"));
            json.compose(dest, r);
            // 2. produce JSON
            dest = new FileOutputStream(Utilities.changeFileExt(filename, ".ttl"));
            RdfParserBase rdf = new RdfParser();
            rdf.compose(dest, r);
        } catch (Exception e) {
            e.printStackTrace();
            throw new FHIRException("Error Processing " + n + ".xml: " + e.getMessage(), e);
        }
    }
}

Example 10 with RdfParser

use of org.hl7.fhir.r5.formats.RdfParser in project kindling by HL7.

the class Publisher method generateCompartmentDefinition.

private void generateCompartmentDefinition(Compartment c) throws Exception {
    CompartmentDefinition cpd = new CompartmentDefinition();
    cpd.setId(c.getName());
    cpd.setUrl("http://hl7.org/fhir/CompartmentDefinition/" + c.getName());
    cpd.setName("Base FHIR compartment definition for " + c.getTitle());
    cpd.setStatus(PublicationStatus.DRAFT);
    cpd.setDescription(c.getIdentity() + ". " + c.getDescription());
    cpd.setExperimental(true);
    cpd.setVersion(page.getVersion().toCode());
    cpd.setDate(page.getGenDate().getTime());
    cpd.setPublisher("FHIR Project Team");
    cpd.addContact().getTelecom().add(Factory.newContactPoint(ContactPointSystem.URL, "http://hl7.org/fhir"));
    cpd.setCode(CompartmentType.fromCode(c.getTitle()));
    cpd.setSearch(true);
    for (String rn : page.getDefinitions().sortedResourceNames()) {
        ResourceDefn rd = page.getDefinitions().getResourceByName(rn);
        String rules = c.getResources().get(rd);
        CompartmentDefinitionResourceComponent cc = cpd.addResource().setCode(rd.getName());
        if (!Utilities.noString(rules)) {
            for (String p : rules.split("\\|")) cc.addParam(p.trim());
        }
    }
    RenderingContext lrc = page.getRc().copy().setLocalPrefix("").setTooCostlyNoteEmpty(PageProcessor.TOO_MANY_CODES_TEXT_EMPTY).setTooCostlyNoteNotEmpty(PageProcessor.TOO_MANY_CODES_TEXT_NOT_EMPTY);
    RendererFactory.factory(cpd, lrc).render(cpd);
    FileOutputStream s = new FileOutputStream(page.getFolders().dstDir + "compartmentdefinition-" + c.getName().toLowerCase() + ".xml");
    new XmlParser().setOutputStyle(OutputStyle.PRETTY).compose(s, cpd);
    s.close();
    s = new FileOutputStream(page.getFolders().dstDir + "compartmentdefinition-" + c.getName().toLowerCase() + ".canonical.xml");
    new XmlParser().setOutputStyle(OutputStyle.CANONICAL).compose(s, cpd);
    s.close();
    cloneToXhtml("compartmentdefinition-" + c.getName().toLowerCase(), "Compartment Definition for " + c.getName(), true, "resource-instance:CompartmentDefinition", "Compartment Definition for " + c.getName(), null, wg("fhir"));
    s = new FileOutputStream(page.getFolders().dstDir + "compartmentdefinition-" + c.getName().toLowerCase() + ".json");
    new JsonParser().setOutputStyle(OutputStyle.PRETTY).compose(s, cpd);
    s.close();
    s = new FileOutputStream(page.getFolders().dstDir + "compartmentdefinition-" + c.getName().toLowerCase() + ".canonical.json");
    new JsonParser().setOutputStyle(OutputStyle.CANONICAL).compose(s, cpd);
    s.close();
    jsonToXhtml("compartmentdefinition-" + c.getName().toLowerCase(), "Compartment Definition for " + c.getName(), resource2Json(cpd), "resource-instance:CompartmentDefinition", "Compartment Definition for " + c.getName(), null, wg("fhir"));
    s = new FileOutputStream(page.getFolders().dstDir + "compartmentdefinition-" + c.getName().toLowerCase() + ".ttl");
    new RdfParser().setOutputStyle(OutputStyle.PRETTY).compose(s, cpd);
    s.close();
    ttlToXhtml("compartmentdefinition-" + c.getName().toLowerCase(), "Compartment Definition for " + c.getName(), resource2Ttl(cpd), "resource-instance:CompartmentDefinition", "Compartment Definition for " + c.getName(), null, wg("fhir"));
    Utilities.copyFile(new CSFile(page.getFolders().dstDir + "compartmentdefinition-" + c.getName().toLowerCase() + ".xml"), new CSFile(page.getFolders().dstDir + "examples" + File.separator + "compartmentdefinition-" + c.getName().toLowerCase() + ".xml"));
    addToResourceFeed(cpd, page.getResourceBundle());
}