Examples with DataRequirement org.hl7.fhir.r5.model.DataRequirement used on opensource projects

Example 41 with DataRequirement

use of org.hl7.fhir.r5.model.DataRequirement in project org.hl7.fhir.core by hapifhir.

the class LibraryRenderer method render.

public boolean render(XhtmlNode x, ResourceWrapper lib) throws FHIRFormatError, DefinitionException, IOException {
    PropertyWrapper authors = lib.getChildByName("author");
    PropertyWrapper editors = lib.getChildByName("editor");
    PropertyWrapper reviewers = lib.getChildByName("reviewer");
    PropertyWrapper endorsers = lib.getChildByName("endorser");
    if ((authors != null && authors.hasValues()) || (editors != null && editors.hasValues()) || (reviewers != null && reviewers.hasValues()) || (endorsers != null && endorsers.hasValues())) {
        boolean email = hasCT(authors, "email") || hasCT(editors, "email") || hasCT(reviewers, "email") || hasCT(endorsers, "email");
        boolean phone = hasCT(authors, "phone") || hasCT(editors, "phone") || hasCT(reviewers, "phone") || hasCT(endorsers, "phone");
        boolean url = hasCT(authors, "url") || hasCT(editors, "url") || hasCT(reviewers, "url") || hasCT(endorsers, "url");
        x.h2().tx("Participants");
        XhtmlNode t = x.table("grid");
        if (authors != null) {
            for (BaseWrapper cd : authors.getValues()) {
                participantRow(t, "Author", cd, email, phone, url);
            }
        }
        if (authors != null) {
            for (BaseWrapper cd : editors.getValues()) {
                participantRow(t, "Editor", cd, email, phone, url);
            }
        }
        if (authors != null) {
            for (BaseWrapper cd : reviewers.getValues()) {
                participantRow(t, "Reviewer", cd, email, phone, url);
            }
        }
        if (authors != null) {
            for (BaseWrapper cd : endorsers.getValues()) {
                participantRow(t, "Endorser", cd, email, phone, url);
            }
        }
    }
    PropertyWrapper artifacts = lib.getChildByName("relatedArtifact");
    if (artifacts != null && artifacts.hasValues()) {
        x.h2().tx("Related Artifacts");
        XhtmlNode t = x.table("grid");
        boolean label = false;
        boolean display = false;
        boolean citation = false;
        for (BaseWrapper ra : artifacts.getValues()) {
            label = label || ra.has("label");
            display = display || ra.has("display");
            citation = citation || ra.has("citation");
        }
        for (BaseWrapper ra : artifacts.getValues()) {
            renderArtifact(t, ra, lib, label, display, citation);
        }
    }
    PropertyWrapper parameters = lib.getChildByName("parameter");
    if (parameters != null && parameters.hasValues()) {
        x.h2().tx("Parameters");
        XhtmlNode t = x.table("grid");
        boolean doco = false;
        for (BaseWrapper p : parameters.getValues()) {
            doco = doco || p.has("documentation");
        }
        for (BaseWrapper p : parameters.getValues()) {
            renderParameter(t, p, doco);
        }
    }
    PropertyWrapper dataRequirements = lib.getChildByName("dataRequirement");
    if (dataRequirements != null && dataRequirements.hasValues()) {
        x.h2().tx("Data Requirements");
        for (BaseWrapper p : dataRequirements.getValues()) {
            renderDataRequirement(x, (DataRequirement) p.getBase());
        }
    }
    PropertyWrapper contents = lib.getChildByName("content");
    if (contents != null) {
        x.h2().tx("Contents");
        boolean isCql = false;
        int counter = 0;
        for (BaseWrapper p : contents.getValues()) {
            Attachment att = (Attachment) p.getBase();
            renderAttachment(x, att, isCql, counter, lib.getId());
            isCql = isCql || (att.hasContentType() && att.getContentType().startsWith("text/cql"));
            counter++;
        }
    }
    return false;
}

Example 42 with DataRequirement

use of org.hl7.fhir.r5.model.DataRequirement in project eCRNow by drajer-health.

the class ValueSetServiceImpl method createPlanDefinitionAction.

@Override
public void createPlanDefinitionAction(TriggerDefinition triggerDefinition) {
    List<DataRequirement> datareqs = triggerDefinition.getData();
    Set<ValueSet> grouperToValueSets = new HashSet<>();
    Set<ValueSet> grouperToCovidValueSets = new HashSet<>();
    for (DataRequirement d : datareqs) {
        DataRequirementCodeFilterComponent codeFilter = d.getCodeFilterFirstRep();
        logger.debug(" Getting Value Set List for Grouper {}", codeFilter.getValueSet());
        List<CanonicalType> valueSetIdList = ApplicationUtils.getValueSetListFromGrouper(codeFilter.getValueSet());
        logger.debug(" Size of valueSetIdList = {}", ((valueSetIdList == null) ? "Null" : valueSetIdList.size()));
        grouperToValueSets = ApplicationUtils.getValueSetByIds(valueSetIdList);
        logger.debug(" Size of Value Sets for Grouper : {}", grouperToValueSets.size());
        grouperToCovidValueSets = ApplicationUtils.getCovidValueSetByIds(valueSetIdList);
        logger.debug(" Size of Covid Value Sets for Grouper : {}", grouperToCovidValueSets.size());
    }
    DataRequirement dataRequirement = triggerDefinition.getDataFirstRep();
    DataRequirementCodeFilterComponent codeFilter = dataRequirement.getCodeFilterFirstRep();
    List<CanonicalType> valueSetIdList = ApplicationUtils.getValueSetListFromGrouper(codeFilter.getValueSet());
    Set<ValueSet> valueSets = ApplicationUtils.getValueSetByIds(valueSetIdList);
    ValueSet valuSetGrouper = ApplicationUtils.getValueSetGrouperFromId(codeFilter.getValueSet());
    String path = dataRequirement.getType() + "." + codeFilter.getPath();
    logger.debug(" Trigger Path to Grouper Map {} , Grouper {}", path, valuSetGrouper == null ? "NULL" : valuSetGrouper.getId());
    ValueSetSingleton.getInstance().getTriggerPathToValueSetsMap().put(path, valueSets);
    if (ValueSetSingleton.getInstance().getTriggerPathToGrouperMap().containsKey(path)) {
        logger.debug(" Found Path in Grouper Map for {}", path);
        if (Boolean.FALSE.equals(ApplicationUtils.isSetContainsValueSet(ValueSetSingleton.getInstance().getTriggerPathToGrouperMap().get(path), valuSetGrouper))) {
            ValueSetSingleton.getInstance().getTriggerPathToGrouperMap().get(path).add(valuSetGrouper);
        }
    } else {
        logger.debug(" Did not Find Path in Grouper Map for {}", path);
        Set<ValueSet> vs = new HashSet<>();
        vs.add(valuSetGrouper);
        ValueSetSingleton.getInstance().getTriggerPathToGrouperMap().put(path, vs);
    }
    if (valuSetGrouper != null) {
        logger.debug(" Adding Grouper Id {} to map", codeFilter.getValueSet());
        ValueSetSingleton.getInstance().addGrouperToValueSetMap(valuSetGrouper.getId(), grouperToValueSets);
        ValueSetSingleton.getInstance().addGrouperToCovidValueSetMap(valuSetGrouper.getId(), grouperToCovidValueSets);
    }
}

Example 43 with DataRequirement

use of org.hl7.fhir.r5.model.DataRequirement in project CRD by HL7-DaVinci.

the class QuestionnairePackageOperation method addLibraryDependencies.

/*
    * Recursively add all of the libraries dependencies related by the "depends-on" type.
    */
private void addLibraryDependencies(Library library, List<String> bundleContents, Bundle questionnaireBundle) {
    List<RelatedArtifact> relatedArtifacts = library.getRelatedArtifact();
    for (RelatedArtifact relatedArtifact : relatedArtifacts) {
        // only add the depends-on artifacts
        if (relatedArtifact.getType() == RelatedArtifactType.DEPENDSON) {
            String relatedArtifactReferenceString = relatedArtifact.getResource();
            String[] referenceParts = relatedArtifactReferenceString.split("/");
            String id = referenceParts[1];
            Resource referencedLibraryResource = null;
            // look in the map and retrieve it instead of looking it up on disk if found
            if (resources.containsKey(id)) {
                referencedLibraryResource = resources.get(id);
            } else {
                referencedLibraryResource = fileStore.getFhirResourceByIdAsFhirResource("R4", "Library", id, baseUrl);
                resources.put(id, referencedLibraryResource);
            }
            // only add the library if not already in the bundle
            if (!bundleContents.contains(referencedLibraryResource.getId())) {
                BundleEntryComponent referencedLibraryBundleEntry = new BundleEntryComponent();
                referencedLibraryBundleEntry.setResource(referencedLibraryResource);
                questionnaireBundle.addEntry(referencedLibraryBundleEntry);
                bundleContents.add(referencedLibraryResource.getId());
                // recurse through the libraries...
                addLibraryDependencies((Library) referencedLibraryResource, bundleContents, questionnaireBundle);
            }
        }
    }
    // grab all of the ValueSets in the DataRequirement
    List<DataRequirement> dataRequirements = library.getDataRequirement();
    for (DataRequirement dataRequirement : dataRequirements) {
        List<DataRequirement.DataRequirementCodeFilterComponent> codeFilters = dataRequirement.getCodeFilter();
        for (DataRequirement.DataRequirementCodeFilterComponent codeFilter : codeFilters) {
            String valueSetUrl = codeFilter.getValueSet();
            Resource valueSetResource = null;
            // look in the map and retrieve it instead of looking it up on disk if found
            if (resources.containsKey(valueSetUrl)) {
                valueSetResource = resources.get(valueSetUrl);
            } else {
                valueSetResource = fileStore.getFhirResourceByUrlAsFhirResource("R4", "ValueSet", valueSetUrl, baseUrl);
                resources.put(valueSetUrl, valueSetResource);
            }
            addResourceToBundle(valueSetResource, bundleContents, questionnaireBundle);
        }
    }
}