Examples with DateTimeType org.hl7.fhir.r5.model.DateTimeType used on opensource projects

Example 16 with DateTimeType

use of org.hl7.fhir.r5.model.DateTimeType in project openmrs-module-fhir2 by openmrs.

the class PatientTranslatorImpl method toFhirResource.

@Override
public Patient toFhirResource(@Nonnull org.openmrs.Patient openmrsPatient) {
    notNull(openmrsPatient, "The Openmrs Patient object should not be null");
    Patient patient = new Patient();
    patient.setId(openmrsPatient.getUuid());
    patient.setActive(!openmrsPatient.getVoided());
    for (PatientIdentifier identifier : openmrsPatient.getActiveIdentifiers()) {
        patient.addIdentifier(identifierTranslator.toFhirResource(identifier));
    }
    for (PersonName name : openmrsPatient.getNames()) {
        patient.addName(nameTranslator.toFhirResource(name));
    }
    if (openmrsPatient.getGender() != null) {
        patient.setGender(genderTranslator.toFhirResource(openmrsPatient.getGender()));
    }
    patient.setBirthDateElement(birthDateTranslator.toFhirResource(openmrsPatient));
    if (openmrsPatient.getDead()) {
        if (openmrsPatient.getDeathDate() != null) {
            patient.setDeceased(new DateTimeType(openmrsPatient.getDeathDate()));
        } else {
            patient.setDeceased(new BooleanType(true));
        }
    } else {
        patient.setDeceased(new BooleanType(false));
    }
    for (PersonAddress address : openmrsPatient.getAddresses()) {
        patient.addAddress(addressTranslator.toFhirResource(address));
    }
    patient.setTelecom(getPatientContactDetails(openmrsPatient));
    patient.getMeta().setLastUpdated(openmrsPatient.getDateChanged());
    patient.addContained(provenanceTranslator.getCreateProvenance(openmrsPatient));
    patient.addContained(provenanceTranslator.getUpdateProvenance(openmrsPatient));
    return patient;
}

Example 17 with DateTimeType

use of org.hl7.fhir.r5.model.DateTimeType in project Gravity-SDOH-Exchange-RI by FHIR.

the class ConditionBundleToDtoConverterBase method conditionInfoToDto.

protected T conditionInfoToDto(ConditionInfoBundleExtractor.ConditionInfoHolder conditionInfo) {
    T conditionDto = newConditionDtoImpl();
    Condition condition = conditionInfo.getCondition();
    conditionDto.setId(condition.getIdElement().getIdPart());
    conditionDto.setName(codeableConceptToStringConverter.convert(condition.getCode()));
    Coding categoryCoding = FhirUtil.findCoding(condition.getCategory(), SDOHMappings.getInstance().getSystem());
    // TODO remove this in future. Fow now two different categories might be used before discussed.
    if (categoryCoding == null) {
        categoryCoding = FhirUtil.findCoding(condition.getCategory(), "http://hl7.org/fhir/us/sdoh-clinicalcare/CodeSystem/SDOHCC-CodeSystemTemporaryCodes");
    }
    if (categoryCoding == null) {
        conditionDto.getErrors().add("SDOH category is not found.");
    } else {
        conditionDto.setCategory(new CodingDto(categoryCoding.getCode(), categoryCoding.getDisplay()));
    }
    Optional<Coding> icdCodeCodingOptional = findCode(condition.getCode(), System.ICD_10);
    if (icdCodeCodingOptional.isPresent()) {
        Coding icdCodeCoding = icdCodeCodingOptional.get();
        conditionDto.setIcdCode(new CodingDto(icdCodeCoding.getCode(), icdCodeCoding.getDisplay()));
    } else {
        conditionDto.getErrors().add("ICD-10 code is not found.");
    }
    Optional<Coding> snomedCodeCodingOptional = findCode(condition.getCode(), System.SNOMED);
    if (snomedCodeCodingOptional.isPresent()) {
        Coding snomedCodeCoding = snomedCodeCodingOptional.get();
        conditionDto.setSnomedCode(new CodingDto(snomedCodeCoding.getCode(), snomedCodeCoding.getDisplay()));
    } else {
        conditionDto.getErrors().add("SNOMED-CT code is not found.");
    }
    QuestionnaireResponse questionnaireResponse = conditionInfo.getQuestionnaireResponse();
    if (questionnaireResponse != null) {
        conditionDto.setAssessmentDate(FhirUtil.toLocalDateTime(questionnaireResponse.getAuthoredElement()));
        Questionnaire questionnaire = conditionInfo.getQuestionnaire();
        if (questionnaire != null) {
            conditionDto.setBasedOn(new ReferenceDto(questionnaireResponse.getIdElement().getIdPart(), questionnaire.getTitle()));
        } else {
            conditionDto.setBasedOn(new ReferenceDto(questionnaireResponse.getIdElement().getIdPart(), questionnaireResponse.getQuestionnaire()));
            conditionDto.getErrors().add("Based on QuestionnaireResponse doesn't have a matching Questionnaire to get a title from. Using URL " + "instead.");
        }
    } else {
        conditionDto.setBasedOn(new StringTypeDto(condition.getEvidenceFirstRep().getCodeFirstRep().getText()));
        Reference recorder = condition.getRecorder();
        conditionDto.setAuthoredBy(new ReferenceDto(recorder.getReferenceElement().getIdPart(), recorder.getDisplay()));
    }
    // abatement must be available for all resolved condition
    if (ConditionClinicalStatusCodes.RESOLVED.toCode().equals(condition.getClinicalStatus().getCodingFirstRep().getCode())) {
        if (condition.getAbatement() instanceof DateTimeType) {
            conditionDto.setResolutionDate(FhirUtil.toLocalDateTime((DateTimeType) condition.getAbatement()));
        } else {
            conditionDto.getErrors().add("Condition is resolved but an abatement property is missing or not of a DateTimeType type.");
        }
    }
    return conditionDto;
}

Example 18 with DateTimeType

use of org.hl7.fhir.r5.model.DateTimeType in project Gravity-SDOH-Exchange-RI by FHIR.

the class ProblemBundleToDtoConverter method conditionInfoToDto.

@Override
protected ProblemDto conditionInfoToDto(ConditionInfoBundleExtractor.ConditionInfoHolder conditionInfo) {
    // TODO refactor this. Avoid manual casting. Refactor the design of a base class instead.
    Assert.isInstanceOf(ProblemInfoBundleExtractor.ProblemInfoHolder.class, conditionInfo, "conditionInfo must be a ProblemInfoHolder.");
    ProblemInfoBundleExtractor.ProblemInfoHolder probleminfo = (ProblemInfoBundleExtractor.ProblemInfoHolder) conditionInfo;
    Condition condition = probleminfo.getCondition();
    ProblemDto problemDto = super.conditionInfoToDto(probleminfo);
    // Onset must be available for the problem list items.
    if (condition.getOnset() != null) {
        problemDto.setStartDate(FhirUtil.toLocalDateTime((DateTimeType) condition.getOnset()));
    } else {
        problemDto.getErrors().add("Condition is a problem-list-item but an onset property is missing or not of a DateTimeType " + "type.");
    }
    problemDto.getTasks().addAll(probleminfo.getTasks().stream().map(t -> new TaskInfoDto(t.getId(), t.getName(), t.getStatus())).collect(Collectors.toList()));
    problemDto.getGoals().addAll(probleminfo.getGoals().stream().map(t -> new GoalInfoDto(t.getId(), t.getName(), t.getStatus())).collect(Collectors.toList()));
    return problemDto;
}

Example 19 with DateTimeType

use of org.hl7.fhir.r5.model.DateTimeType in project integration-adaptor-111 by nhsconnect.

the class DateUtil method parse.

public static DateTimeType parse(String dateToParse) {
    DateFormat format = getFormat(dateToParse);
    SimpleDateFormat formatter = getFormatter(format);
    try {
        Date date = formatter.parse(dateToParse);
        return new DateTimeType(date, format.getPrecision(), TimeZone.getTimeZone(ZoneOffset.UTC));
    } catch (ParseException e) {
        throw new IllegalStateException(String.format(ERROR_MESSAGE, dateToParse), e);
    }
}

Example 20 with DateTimeType

use of org.hl7.fhir.r5.model.DateTimeType in project org.hl7.fhir.core by hapifhir.

the class ICD11Generator method execute.

private void execute(String base, String dest) throws IOException {
    CodeSystem cs = makeMMSCodeSystem();
    JsonObject version = fetchJson(Utilities.pathURL(base, "/icd/release/11/mms"));
    String[] p = version.get("latestRelease").getAsString().split("\\/");
    cs.setVersion(p[6]);
    JsonObject root = fetchJson(url(base, version.get("latestRelease").getAsString()));
    cs.setDateElement(new DateTimeType(root.get("releaseDate").getAsString()));
    for (JsonElement child : root.getAsJsonArray("child")) {
        processMMSEntity(cs, base, child.getAsString(), cs.addConcept(), dest);
        System.out.println();
    }
    new XmlParser(XmlVersion.V1_1).setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(Utilities.path(dest, "icd-11-mms.xml")), cs);
    makeFullVs(dest, cs);
    cs = makeEntityCodeSystem();
    root = fetchJson(Utilities.pathURL(base, "/icd/entity"));
    cs.setVersion(root.get("releaseId").getAsString());
    cs.setDateElement(new DateTimeType(root.get("releaseDate").getAsString()));
    cs.setTitle(readString(root, "title"));
    Set<String> ids = new HashSet<>();
    for (JsonElement child : root.getAsJsonArray("child")) {
        processEntity(cs, ids, base, tail(child.getAsString()), dest);
        System.out.println();
    }
    new XmlParser(XmlVersion.V1_1).setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(Utilities.path(dest, "icd-11-foundation.xml")), cs);
    makeFullVs2(dest, cs);
    System.out.println("finished");
}