Examples with Measure org.hl7.fhir.r5.model.Measure used on opensource projects

Example 56 with Measure

use of org.hl7.fhir.r5.model.Measure in project quality-measure-and-cohort-service by Alvearie.

the class MeasureHelperTest method testResolveByCanonicalUrl.

@Test
public void testResolveByCanonicalUrl() throws Exception {
    Measure measure = getCohortMeasure("Test", getLibrary("123", DEFAULT_VERSION, "cql/basic/Test-1.0.0.xml"), "Female");
    measure.setUrl("http://fhir.ibm.com/fhir-server/api/v4/Measure/Test-1.0.0");
    MappingBuilder builder = get(urlMatching("/Measure\\?url=.*&_format=json"));
    mockFhirResourceRetrieval(builder, getBundle(measure));
    Measure actual = MeasureHelper.loadMeasure(measure.getUrl(), resolver);
    assertNotNull(actual);
    assertEquals("Test", actual.getName());
}

Example 57 with Measure

use of org.hl7.fhir.r5.model.Measure in project quality-measure-and-cohort-service by Alvearie.

the class MeasureHelperTest method testResolveByID.

@Test
public void testResolveByID() throws Exception {
    Measure measure = getCohortMeasure("Test", getLibrary("123", DEFAULT_VERSION, "cql/basic/Test-1.0.0.xml"), "Female");
    mockFhirResourceRetrieval(measure);
    Measure actual = MeasureHelper.loadMeasure(measure.getId(), resolver);
    assertNotNull(actual);
    assertEquals("Test", actual.getName());
}

Example 58 with Measure

use of org.hl7.fhir.r5.model.Measure in project quality-measure-and-cohort-service by Alvearie.

the class MeasureTestBase method getCohortMeasure.

public Measure getCohortMeasure(String measureName, Library library, String expression) throws Exception {
    Measure measure = getTemplateMeasure(measureName, library, MeasureScoring.COHORT);
    Measure.MeasureGroupComponent group = new Measure.MeasureGroupComponent();
    addPopulations(group, Collections.singletonMap(MeasurePopulationType.INITIALPOPULATION, expression));
    measure.addGroup(group);
    return measure;
}

Example 59 with Measure

use of org.hl7.fhir.r5.model.Measure in project quality-measure-and-cohort-service by Alvearie.

the class MeasureTestBase method getProportionMeasure.

public Measure getProportionMeasure(String measureName, Library library, Map<MeasurePopulationType, String> expressionsByPopType) throws Exception {
    Measure measure = getTemplateMeasure(measureName, library, MeasureScoring.PROPORTION);
    Measure.MeasureGroupComponent group = new Measure.MeasureGroupComponent();
    addPopulations(group, expressionsByPopType);
    measure.addGroup(group);
    return measure;
}

Example 60 with Measure

use of org.hl7.fhir.r5.model.Measure in project quality-measure-and-cohort-service by Alvearie.

the class CohortEngineRestHandlerTest method testEvaluateMeasureMissingPatient.

@PrepareForTest({ Response.class, TenantManager.class, ServiceBaseUtility.class })
@Test
public void testEvaluateMeasureMissingPatient() throws Exception {
    prepMocks();
    PowerMockito.mockStatic(ServiceBaseUtility.class);
    PowerMockito.when(ServiceBaseUtility.apiSetup(VERSION, logger, MethodNames.EVALUATE_MEASURE.getName())).thenReturn(null);
    mockResponseClasses();
    Library library = TestHelper.getTemplateLibrary();
    Measure measure = TestHelper.getTemplateMeasure(library);
    Patient patient = getPatient("patientId", AdministrativeGender.MALE, 40);
    mockFhirResourceRetrieval("/metadata?_format=json", getCapabilityStatement());
    mockNotFound("/Patient/" + patient.getId() + "\\?_format=json");
    FhirServerConfig clientConfig = getFhirServerConfig();
    Map<String, Parameter> parameterOverrides = new HashMap<>();
    parameterOverrides.put("Measurement Period", new IntervalParameter(new DateParameter("2019-07-04"), true, new DateParameter("2020-07-04"), true));
    MeasureContext measureContext = new MeasureContext(measure.getId(), parameterOverrides);
    MeasureEvaluation evaluationRequest = new MeasureEvaluation();
    evaluationRequest.setDataServerConfig(clientConfig);
    evaluationRequest.setPatientId(patient.getId());
    evaluationRequest.setMeasureContext(measureContext);
    // evaluationRequest.setEvidenceOptions(evidenceOptions);
    FhirContext fhirContext = FhirContext.forR4();
    IParser parser = fhirContext.newJsonParser().setPrettyPrint(true);
    // Create the metadata part of the request
    ObjectMapper om = new ObjectMapper();
    String json = om.writeValueAsString(evaluationRequest);
    ByteArrayInputStream jsonIs = new ByteArrayInputStream(json.getBytes());
    IAttachment rootPart = mockAttachment(jsonIs);
    // Create the ZIP part of the request
    ByteArrayOutputStream baos = new ByteArrayOutputStream();
    TestHelper.createMeasureArtifact(baos, parser, measure, library);
    ByteArrayInputStream zipIs = new ByteArrayInputStream(baos.toByteArray());
    IAttachment measurePart = mockAttachment(zipIs);
    // Assemble them together into a reasonable facsimile of the real request
    IMultipartBody body = mock(IMultipartBody.class);
    when(body.getAttachment(CohortEngineRestHandler.REQUEST_DATA_PART)).thenReturn(rootPart);
    when(body.getAttachment(CohortEngineRestHandler.MEASURE_PART)).thenReturn(measurePart);
    Response loadResponse = restHandler.evaluateMeasure(mockRequestContext, VERSION, body);
    assertNotNull(loadResponse);
    PowerMockito.verifyStatic(Response.class);
    Response.status(400);
}