Examples with Measure org.hl7.fhir.r5.model.Measure used on opensource projects

Example 51 with Measure

use of org.hl7.fhir.r5.model.Measure in project quality-measure-and-cohort-service by Alvearie.

the class MeasureEvaluatorTest method setupDefineReturnLibrary.

private Library setupDefineReturnLibrary() throws Exception {
    Library fhirHelpers = mockLibraryRetrieval("FHIRHelpers", "4.0.0", "cql/fhir-helpers/FHIRHelpers.cql");
    Library library2 = mockLibraryRetrieval("TestAdultMales2", DEFAULT_VERSION, "cql/fhir-measure/test-adult-males2.cql");
    Library library3 = mockLibraryRetrieval("TestAdultMales3", DEFAULT_VERSION, "cql/fhir-measure/test-adult-males3.cql");
    Library library = mockLibraryRetrieval("TestAdultMales", DEFAULT_VERSION, "cql/fhir-measure/test-adult-males.cql");
    library.addRelatedArtifact(asRelation(fhirHelpers));
    library.addRelatedArtifact(asRelation(library2));
    library.addRelatedArtifact(asRelation(library3));
    return library;
}

Example 52 with Measure

use of org.hl7.fhir.r5.model.Measure in project quality-measure-and-cohort-service by Alvearie.

the class MeasureEvaluatorTest method runCareGapTest.

private void runCareGapTest(Map<String, Parameter> parameters, Map<String, Integer> careGapExpectations) throws ParseException, Exception {
    CapabilityStatement metadata = getCapabilityStatement();
    mockFhirResourceRetrieval("/metadata?_format=json", metadata);
    Patient patient = getPatient("123", AdministrativeGender.MALE, "1970-10-10");
    mockFhirResourceRetrieval(patient);
    Library library = mockLibraryRetrieval("TestDummyPopulations", DEFAULT_VERSION, "cql/fhir-measure/test-dummy-populations.cql");
    Measure measure = getCareGapMeasure("ProportionMeasureName", library, expressionsByPopulationType, "CareGap1", "CareGap2");
    mockFhirResourceRetrieval(measure);
    MeasureReport report = evaluator.evaluatePatientMeasure(measure.getId(), patient.getId(), parameters);
    assertNotNull(report);
    assertPopulationExpectations(measure, report, careGapExpectations);
}

Example 53 with Measure

use of org.hl7.fhir.r5.model.Measure in project quality-measure-and-cohort-service by Alvearie.

the class MeasureEvaluatorTest method multilevel_library_dependencies___successfully_loaded_and_evaluated.

@Test
public void multilevel_library_dependencies___successfully_loaded_and_evaluated() throws Exception {
    mockFhirResourceRetrieval("/metadata?_format=json", getCapabilityStatement());
    Patient patient = getPatient("123", AdministrativeGender.MALE, "1970-10-10");
    mockFhirResourceRetrieval(patient);
    Library nestedHelperLibrary = mockLibraryRetrieval("NestedChild", DEFAULT_VERSION, "cql/fhir-measure-nested-libraries/test-nested-child.cql");
    Library helperLibrary = mockLibraryRetrieval("Child", DEFAULT_VERSION, "cql/fhir-measure-nested-libraries/test-child.cql");
    helperLibrary.addRelatedArtifact(asRelation(nestedHelperLibrary));
    Library library = mockLibraryRetrieval("Parent", DEFAULT_VERSION, "cql/fhir-measure-nested-libraries/test-parent.cql");
    library.addRelatedArtifact(asRelation(helperLibrary));
    Measure measure = getCareGapMeasure("NestedLibraryMeasure", library, expressionsByPopulationType, "CareGap1", "CareGap2");
    mockFhirResourceRetrieval(measure);
    Map<String, Parameter> passingParameters = new HashMap<>();
    passingParameters.put("InInitialPopulation", new BooleanParameter(true));
    List<MeasureContext> measureContexts = new ArrayList<>();
    measureContexts.add(new MeasureContext(measure.getId(), passingParameters));
    List<MeasureReport> reports = evaluator.evaluatePatientMeasures(patient.getId(), measureContexts);
    assertEquals(1, reports.size());
    MeasureReport report = reports.get(0);
    verifyStandardPopulationCounts(report);
}

Example 54 with Measure

use of org.hl7.fhir.r5.model.Measure in project quality-measure-and-cohort-service by Alvearie.

the class MeasureEvaluatorTest method in_populations_no_evaluated_resources_returned.

@Test
public void in_populations_no_evaluated_resources_returned() throws Exception {
    CapabilityStatement metadata = getCapabilityStatement();
    mockFhirResourceRetrieval("/metadata?_format=json", metadata);
    Patient patient = getPatient("123", AdministrativeGender.MALE, "1970-10-10");
    mockFhirResourceRetrieval(patient);
    Library library = setupDefineReturnLibrary();
    expressionsByPopulationType.clear();
    expressionsByPopulationType.put(MeasurePopulationType.INITIALPOPULATION, INITIAL_POPULATION);
    expressionsByPopulationType.put(MeasurePopulationType.DENOMINATOR, DENOMINATOR);
    expressionsByPopulationType.put(MeasurePopulationType.NUMERATOR, NUMERATOR);
    Measure measure = getProportionMeasure("ProportionMeasureName", library, expressionsByPopulationType);
    mockFhirResourceRetrieval(measure);
    MeasureReport report = evaluator.evaluatePatientMeasure(measure.getId(), patient.getId(), null, new MeasureEvidenceOptions());
    assertNotNull(report);
    assertTrue(report.getEvaluatedResource().isEmpty());
    assertEquals(null, report.getExtensionByUrl(CDMConstants.EVIDENCE_URL));
}

Example 55 with Measure

use of org.hl7.fhir.r5.model.Measure in project quality-measure-and-cohort-service by Alvearie.

the class MeasureHelperTest method testResolveByIdentifier_getLatestMeasure.

@Test
public void testResolveByIdentifier_getLatestMeasure() throws Exception {
    String identifierSystem = "system1";
    String identifierValue = "val1";
    Measure measure1 = getCohortMeasure("Test", getLibrary("123", DEFAULT_VERSION, "cql/basic/Test-1.0.0.xml"), "Female");
    Measure measure2 = getCohortMeasure("Test", getLibrary("123", DEFAULT_VERSION, "cql/basic/Test-1.0.0.xml"), "Female");
    Measure measure3 = getCohortMeasure("Test", getLibrary("123", DEFAULT_VERSION, "cql/basic/Test-1.0.0.xml"), "Female");
    measure1.setVersion("1.0.0");
    measure2.setVersion("2.0.0");
    org.hl7.fhir.r4.model.Identifier identifier = new IdentifierBuilder().buildValue(identifierValue).buildSystem(identifierSystem).build();
    measure1.setIdentifier(Collections.singletonList(identifier));
    measure2.setIdentifier(Collections.singletonList(identifier));
    measure3.setIdentifier(Collections.singletonList(identifier));
    MappingBuilder builder = get(urlPathEqualTo("/Measure")).withQueryParam("identifier", new EqualToPattern(identifierSystem + '|' + identifierValue)).withQueryParam("_format", new EqualToPattern("json"));
    mockFhirResourceRetrieval(builder, getBundle(measure1, measure2, measure3));
    Measure actual = MeasureHelper.loadMeasure(new Identifier(identifierSystem, identifierValue), null, resolver);
    assertNotNull(actual);
    assertEquals("Test", actual.getName());
    assertEquals("2.0.0", actual.getVersion());
}