Examples with PlanDefinition org.hl7.fhir.r5.model.PlanDefinition used on opensource projects

Example 46 with PlanDefinition

use of org.hl7.fhir.r5.model.PlanDefinition in project org.hl7.fhir.core by hapifhir.

the class BaseWorkerContext method cacheResourceFromPackage.

public void cacheResourceFromPackage(Resource r, PackageVersion packageInfo) throws FHIRException {
    synchronized (lock) {
        Map<String, ResourceProxy> map = allResourcesById.get(r.fhirType());
        if (map == null) {
            map = new HashMap<String, ResourceProxy>();
            allResourcesById.put(r.fhirType(), map);
        }
        if ((packageInfo == null || !packageInfo.isExamplesPackage()) || !map.containsKey(r.getId())) {
            map.put(r.getId(), new ResourceProxy(r));
        } else {
            System.out.println("Ignore " + r.fhirType() + "/" + r.getId() + " from package " + packageInfo.toString());
        }
        if (r instanceof CodeSystem || r instanceof NamingSystem) {
            oidCache.clear();
        }
        if (r instanceof CanonicalResource) {
            CanonicalResource m = (CanonicalResource) r;
            String url = m.getUrl();
            if (!allowLoadingDuplicates && hasResource(r.getClass(), url)) {
                // spcial workaround for known problems with existing packages
                if (Utilities.existsInList(url, "http://hl7.org/fhir/SearchParameter/example")) {
                    return;
                }
                throw new DefinitionException(formatMessage(I18nConstants.DUPLICATE_RESOURCE_, url));
            }
            if (r instanceof StructureDefinition) {
                StructureDefinition sd = (StructureDefinition) m;
                if ("1.4.0".equals(version)) {
                    fixOldSD(sd);
                }
                structures.see(sd, packageInfo);
            } else if (r instanceof ValueSet) {
                valueSets.see((ValueSet) m, packageInfo);
            } else if (r instanceof CodeSystem) {
                CodeSystemUtilities.crossLinkCodeSystem((CodeSystem) r);
                codeSystems.see((CodeSystem) m, packageInfo);
            } else if (r instanceof ImplementationGuide) {
                guides.see((ImplementationGuide) m, packageInfo);
            } else if (r instanceof CapabilityStatement) {
                capstmts.see((CapabilityStatement) m, packageInfo);
            } else if (r instanceof Measure) {
                measures.see((Measure) m, packageInfo);
            } else if (r instanceof Library) {
                libraries.see((Library) m, packageInfo);
            } else if (r instanceof SearchParameter) {
                searchParameters.see((SearchParameter) m, packageInfo);
            } else if (r instanceof PlanDefinition) {
                plans.see((PlanDefinition) m, packageInfo);
            } else if (r instanceof OperationDefinition) {
                operations.see((OperationDefinition) m, packageInfo);
            } else if (r instanceof Questionnaire) {
                questionnaires.see((Questionnaire) m, packageInfo);
            } else if (r instanceof ConceptMap) {
                maps.see((ConceptMap) m, packageInfo);
            } else if (r instanceof StructureMap) {
                transforms.see((StructureMap) m, packageInfo);
            } else if (r instanceof NamingSystem) {
                systems.see((NamingSystem) m, packageInfo);
            }
        }
    }
}

Example 47 with PlanDefinition

use of org.hl7.fhir.r5.model.PlanDefinition in project org.hl7.fhir.core by hapifhir.

the class BaseWorkerContext method registerResourceFromPackage.

public void registerResourceFromPackage(CanonicalResourceProxy r, PackageVersion packageInfo) throws FHIRException {
    synchronized (lock) {
        Map<String, ResourceProxy> map = allResourcesById.get(r.getType());
        if (map == null) {
            map = new HashMap<String, ResourceProxy>();
            allResourcesById.put(r.getType(), map);
        }
        if ((packageInfo == null || !packageInfo.isExamplesPackage()) || !map.containsKey(r.getId())) {
            map.put(r.getId(), new ResourceProxy(r));
        }
        String url = r.getUrl();
        if (!allowLoadingDuplicates && hasResource(r.getType(), url)) {
            // spcial workaround for known problems with existing packages
            if (Utilities.existsInList(url, "http://hl7.org/fhir/SearchParameter/example")) {
                return;
            }
            throw new DefinitionException(formatMessage(I18nConstants.DUPLICATE_RESOURCE_, url));
        }
        switch(r.getType()) {
            case "StructureDefinition":
                if ("1.4.0".equals(version)) {
                    StructureDefinition sd = (StructureDefinition) r.getResource();
                    fixOldSD(sd);
                }
                structures.register(r, packageInfo);
                break;
            case "ValueSet":
                valueSets.register(r, packageInfo);
                break;
            case "CodeSystem":
                codeSystems.register(r, packageInfo);
                break;
            case "ImplementationGuide":
                guides.register(r, packageInfo);
                break;
            case "CapabilityStatement":
                capstmts.register(r, packageInfo);
                break;
            case "Measure":
                measures.register(r, packageInfo);
                break;
            case "Library":
                libraries.register(r, packageInfo);
                break;
            case "SearchParameter":
                searchParameters.register(r, packageInfo);
                break;
            case "PlanDefinition":
                plans.register(r, packageInfo);
                break;
            case "OperationDefinition":
                operations.register(r, packageInfo);
                break;
            case "Questionnaire":
                questionnaires.register(r, packageInfo);
                break;
            case "ConceptMap":
                maps.register(r, packageInfo);
                break;
            case "StructureMap":
                transforms.register(r, packageInfo);
                break;
            case "NamingSystem":
                systems.register(r, packageInfo);
                break;
        }
    }
}

Example 48 with PlanDefinition

use of org.hl7.fhir.r5.model.PlanDefinition in project org.hl7.fhir.core by hapifhir.

the class RdfParser method composePlanDefinitionPlanDefinitionActionParticipantComponent.

protected void composePlanDefinitionPlanDefinitionActionParticipantComponent(Complex parent, String parentType, String name, PlanDefinition.PlanDefinitionActionParticipantComponent element, int index) {
    if (element == null)
        return;
    Complex t;
    if (Utilities.noString(parentType))
        t = parent;
    else {
        t = parent.predicate("fhir:" + parentType + '.' + name);
    }
    composeBackboneElement(t, "participant", name, element, index);
    if (element.hasTypeElement())
        composeEnum(t, "PlanDefinition", "type", element.getTypeElement(), -1);
    if (element.hasRole())
        composeCodeableConcept(t, "PlanDefinition", "role", element.getRole(), -1);
}

Example 49 with PlanDefinition

use of org.hl7.fhir.r5.model.PlanDefinition in project org.hl7.fhir.core by hapifhir.

the class DataRenderer method isCanonical.

private boolean isCanonical(String path) {
    if (!path.endsWith(".url"))
        return false;
    String t = path.substring(0, path.length() - 4);
    StructureDefinition sd = getContext().getWorker().fetchTypeDefinition(t);
    if (sd == null)
        return false;
    if (Utilities.existsInList(t, VersionUtilities.getCanonicalResourceNames(getContext().getWorker().getVersion()))) {
        return true;
    }
    if (Utilities.existsInList(t, "ActivityDefinition", "CapabilityStatement", "CapabilityStatement2", "ChargeItemDefinition", "Citation", "CodeSystem", "CompartmentDefinition", "ConceptMap", "ConditionDefinition", "EventDefinition", "Evidence", "EvidenceReport", "EvidenceVariable", "ExampleScenario", "GraphDefinition", "ImplementationGuide", "Library", "Measure", "MessageDefinition", "NamingSystem", "PlanDefinition"))
        return true;
    return sd.getBaseDefinitionElement().hasExtension("http://hl7.org/fhir/StructureDefinition/structuredefinition-codegen-super");
}

Example 50 with PlanDefinition

use of org.hl7.fhir.r5.model.PlanDefinition in project eCRNow by drajer-health.

the class PlanDefinitionProcessor method processResourceBundle.

public void processResourceBundle() {
    // Reading Bundle with Id 506 from ersd server.
    // Bundle esrdBundle =
    // esrdClient.read().resource(Bundle.class).withId("506").execute();
    logger.info(" Reading ERSD Bundle File ");
    Bundle ersdBundle = readErsdBundleFromFile();
    Bundle actualErsdBundle = null;
    if (ersdBundle != null) {
        if (ersdBundle.getEntry() != null) {
            logger.info(" Bundle has been created with Entries : {}", ersdBundle.getEntry().size());
        }
        // Check to see if this is a searchset bundle.
        if (ersdBundle.getType() == Bundle.BundleType.SEARCHSET) {
            // Check if there is a bundle of type collection and use it.
            // Typically it will be the first one.
            logger.info("Found a Bundle from a search result, containing the actual ERSD Bundle");
            List<BundleEntryComponent> innerBundle = ersdBundle.getEntry();
            for (BundleEntryComponent bundleEntry : innerBundle) {
                if (Optional.ofNullable(bundleEntry).isPresent() && bundleEntry.getResource().getResourceType().equals(ResourceType.Bundle)) {
                    logger.debug(" Found a bundle within a bundle ");
                    Bundle ib = (Bundle) (bundleEntry.getResource());
                    if (ib.getType() == Bundle.BundleType.COLLECTION && ib.getId().contains(ERSD_BUNDLE_ID_STRING)) {
                        logger.info(" Found the bundle which is the actual ERSD Bundle file ");
                        actualErsdBundle = ib;
                        break;
                    }
                }
            }
        }
        List<BundleEntryComponent> bundleEntries = null;
        if (actualErsdBundle != null) {
            logger.info(" Inner ERSD Bundle Found from where we need to extract the plan definition");
            bundleEntries = actualErsdBundle.getEntry();
        } else {
            logger.info(" Bundle read from configuration is a valid bundle to extract the plan definition");
            bundleEntries = ersdBundle.getEntry();
        }
        ValueSet valueSet = null;
        PlanDefinition planDefinition = null;
        List<PlanDefinitionActionComponent> actions = null;
        List<TriggerDefinition> triggerDefinitionsList = null;
        Set<ValueSet> covidValuesets = new HashSet<>();
        Set<ValueSet> valuesets = new HashSet<>();
        Set<ValueSet> grouperValueSets = new HashSet<>();
        Map<EventTypes.EcrActionTypes, Set<AbstractAction>> acts = new HashMap<>();
        for (BundleEntryComponent bundleEntry : bundleEntries) {
            if (Optional.ofNullable(bundleEntry).isPresent()) {
                logger.debug(" Bundle Entries present and is of type {}", bundleEntry.getResource().getResourceType());
                if (bundleEntry.getResource().getResourceType().equals(ResourceType.ValueSet)) {
                    logger.debug(" Found Value set");
                    valueSet = (ValueSet) bundleEntry.getResource();
                    if (ApplicationUtils.isACovidValueSet(valueSet)) {
                        logger.debug(" Found a COVID Value Set {}", valueSet.getId());
                        valueSetService.createValueSet(valueSet);
                        covidValuesets.add(valueSet);
                        valuesets.add(valueSet);
                    } else if (ApplicationUtils.isAGrouperValueSet(valueSet)) {
                        logger.debug(" Found a Grouper Value Set {}", valueSet.getId());
                        valueSetService.createValueSetGrouper(valueSet);
                        grouperValueSets.add(valueSet);
                    } else {
                        logger.debug(" Found a Regular Value Set {}", valueSet.getId());
                        valueSetService.createValueSet(valueSet);
                        valuesets.add(valueSet);
                    }
                } else if (bundleEntry.getResource().getResourceType().equals(ResourceType.Library)) {
                    logger.debug(" Found the Library ");
                    Library lib = (Library) bundleEntry.getResource();
                    if (lib.getId().contains("rctc")) {
                        logger.debug(" Adding Rctc Version to the Action Repo {}", lib.getVersion());
                        ActionRepo.getInstance().setRctcVersion(lib.getVersion());
                    }
                }
            }
        }
        ValueSetSingleton.getInstance().setCovidValueSets(covidValuesets);
        ValueSetSingleton.getInstance().setValueSets(valuesets);
        ValueSetSingleton.getInstance().setGrouperValueSets(grouperValueSets);
        for (BundleEntryComponent bundleEntry : bundleEntries) {
            if (Optional.ofNullable(bundleEntry).isPresent()) {
                if (bundleEntry.getResource().getResourceType().equals(ResourceType.PlanDefinition)) {
                    planDefinition = (PlanDefinition) bundleEntry.getResource();
                    actions = planDefinition.getAction();
                    logger.info(" Found Plan Definition ");
                    if (actions != null && !actions.isEmpty()) {
                        for (PlanDefinitionActionComponent action : actions) {
                            if (action.getId().equals("match-trigger")) {
                                logger.info(" Identified Match Trigger EICR Action ");
                                MatchTriggerAction mta = new MatchTriggerAction();
                                populateActionData(mta, acts, action, EcrActionTypes.MATCH_TRIGGER);
                                triggerDefinitionsList = action.getTrigger();
                                if (triggerDefinitionsList != null && !triggerDefinitionsList.isEmpty()) {
                                    logger.info(" Number of Trigger Definitions {}", triggerDefinitionsList.size());
                                    for (TriggerDefinition triggerDefinition : triggerDefinitionsList) {
                                        valueSetService.createPlanDefinitionAction(triggerDefinition);
                                    }
                                }
                            } else if (action.getId().equals("create-eicr")) {
                                logger.info(" Identified Create EICR Action ");
                                CreateEicrAction mta = new CreateEicrAction();
                                populateActionData(mta, acts, action, EcrActionTypes.CREATE_EICR);
                            } else if (action.getId().equals("periodic-update-eicr")) {
                                logger.info(" Identified Periodic Update EICR Action ");
                                PeriodicUpdateEicrAction mta = new PeriodicUpdateEicrAction();
                                populateActionData(mta, acts, action, EcrActionTypes.PERIODIC_UPDATE_EICR);
                            } else if (action.getId().equals("create-eicr-after-recheck")) {
                                logger.info(" Identified Create EICR After Recheck Action ");
                                CreateEicrAfterRecheckAction cra = new CreateEicrAfterRecheckAction();
                                populateActionData(cra, acts, action, EcrActionTypes.CREATE_EICR_AFTER_RECHECK);
                            } else if (action.getId().equals("close-out-eicr")) {
                                logger.info(" Identified Close Out EICR Action ");
                                CloseOutEicrAction mta = new CloseOutEicrAction();
                                populateActionData(mta, acts, action, EcrActionTypes.CLOSE_OUT_EICR);
                            } else if (action.getId().equals("validate-eicr")) {
                                logger.info(" Identified Validate EICR Action ");
                                ValidateEicrAction mta = new ValidateEicrAction();
                                populateActionData(mta, acts, action, EcrActionTypes.VALIDATE_EICR);
                            } else if (action.getId().equals("route-and-send-eicr")) {
                                logger.info(" Identified Submit EICR Action ");
                                SubmitEicrAction mta = new SubmitEicrAction();
                                populateActionData(mta, acts, action, EcrActionTypes.SUBMIT_EICR);
                                populateRRCheckAction(acts, mta);
                            }
                        }
                    }
                }
            }
        }
        if (acts != null) {
            ActionRepo.getInstance().setActions(acts);
            ActionRepo.getInstance().setupTriggerBasedActions();
        }
    }
}