Examples with RelatedArtifact org.hl7.fhir.r5.model.RelatedArtifact used on opensource projects

Example 6 with RelatedArtifact

use of org.hl7.fhir.r5.model.RelatedArtifact in project cqf-ruler by DBCG.

the class ActivityDefinitionApplyProvider method resolveDiagnosticReport.

private DiagnosticReport resolveDiagnosticReport(ActivityDefinition activityDefinition, String patientId) {
    DiagnosticReport diagnosticReport = new DiagnosticReport();
    diagnosticReport.setStatus(DiagnosticReport.DiagnosticReportStatus.UNKNOWN);
    diagnosticReport.setSubject(new Reference(patientId));
    if (activityDefinition.hasCode()) {
        diagnosticReport.setCode(activityDefinition.getCode());
    } else {
        throw new ActivityDefinitionApplyException("Missing required ActivityDefinition.code property for DiagnosticReport");
    }
    if (activityDefinition.hasRelatedArtifact()) {
        List<Attachment> presentedFormAttachments = new ArrayList<>();
        for (RelatedArtifact artifact : activityDefinition.getRelatedArtifact()) {
            Attachment attachment = new Attachment();
            if (artifact.hasUrl()) {
                attachment.setUrl(artifact.getUrl());
            }
            if (artifact.hasDisplay()) {
                attachment.setTitle(artifact.getDisplay());
            }
            presentedFormAttachments.add(attachment);
        }
        diagnosticReport.setPresentedForm(presentedFormAttachments);
    }
    return diagnosticReport;
}

Example 7 with RelatedArtifact

use of org.hl7.fhir.r5.model.RelatedArtifact in project cqf-ruler by DBCG.

the class ActivityDefinitionApplyProvider method resolveCommunication.

private Communication resolveCommunication(ActivityDefinition activityDefinition, String patientId) {
    Communication communication = new Communication();
    communication.setStatus(Communication.CommunicationStatus.UNKNOWN);
    communication.setSubject(new Reference(patientId));
    if (activityDefinition.hasCode()) {
        communication.setReasonCode(Collections.singletonList(activityDefinition.getCode()));
    }
    if (activityDefinition.hasRelatedArtifact()) {
        for (RelatedArtifact artifact : activityDefinition.getRelatedArtifact()) {
            if (artifact.hasUrl()) {
                Attachment attachment = new Attachment().setUrl(artifact.getUrl());
                if (artifact.hasDisplay()) {
                    attachment.setTitle(artifact.getDisplay());
                }
                Communication.CommunicationPayloadComponent payload = new Communication.CommunicationPayloadComponent();
                payload.setContent(artifact.hasDisplay() ? attachment.setTitle(artifact.getDisplay()) : attachment);
                communication.setPayload(Collections.singletonList(payload));
            }
        // TODO - other relatedArtifact types
        }
    }
    return communication;
}

Example 8 with RelatedArtifact

use of org.hl7.fhir.r5.model.RelatedArtifact in project cqf-ruler by DBCG.

the class ActivityDefinitionApplyProvider method resolveCommunication.

private Communication resolveCommunication(ActivityDefinition activityDefinition, String patientId) {
    Communication communication = new Communication();
    communication.setStatus(Communication.CommunicationStatus.UNKNOWN);
    communication.setSubject(new Reference(patientId));
    if (activityDefinition.hasCode()) {
        communication.setReasonCode(Collections.singletonList(activityDefinition.getCode()));
    }
    if (activityDefinition.hasRelatedArtifact()) {
        for (RelatedArtifact artifact : activityDefinition.getRelatedArtifact()) {
            if (artifact.hasUrl()) {
                Attachment attachment = new Attachment().setUrl(artifact.getUrl());
                if (artifact.hasDisplay()) {
                    attachment.setTitle(artifact.getDisplay());
                }
                Communication.CommunicationPayloadComponent payload = new Communication.CommunicationPayloadComponent();
                payload.setContent(artifact.hasDisplay() ? attachment.setTitle(artifact.getDisplay()) : attachment);
                communication.setPayload(Collections.singletonList(payload));
            }
        // TODO - other relatedArtifact types
        }
    }
    return communication;
}

Example 9 with RelatedArtifact

use of org.hl7.fhir.r5.model.RelatedArtifact in project quality-measure-and-cohort-service by Alvearie.

the class CohortCLITest method testCQLTranslationCustomIGWithTargetUrl.

@Test
public void testCQLTranslationCustomIGWithTargetUrl() throws Exception {
    FhirServerConfig fhirConfig = getFhirServerConfig();
    mockFhirResourceRetrieval("/metadata?_format=json", getCapabilityStatement());
    Patient patient = getPatient("123", Enumerations.AdministrativeGender.FEMALE, "1978-05-06");
    patient.addExtension(new Extension("http://fakeIg.com/fake-extension", new StringType("fakeValue")));
    mockFhirResourceRetrieval(patient);
    Library root = getLibrary("test", DEFAULT_RESOURCE_VERSION, "cql/ig-test/Test-1.0.0.cql");
    Library helpers = getLibrary("FHIRHelpers", "4.0.0", "cql/fhir-helpers/FHIRHelpers.cql", "text/cql", "cql/fhir-helpers/FHIRHelpers.xml", "application/elm+json");
    RelatedArtifact related = new RelatedArtifact();
    related.setType(RelatedArtifactType.DEPENDSON);
    related.setResource("/Library/" + helpers.getId());
    root.addRelatedArtifact(related);
    mockFhirResourceRetrieval(root);
    mockFhirSingletonBundleRetrieval(helpers);
    File tmpFile = new File("target/fhir-stub.json");
    ObjectMapper om = new ObjectMapper();
    try (Writer w = new FileWriter(tmpFile)) {
        w.write(om.writeValueAsString(fhirConfig));
    }
    try {
        PrintStream originalOut = System.out;
        ByteArrayOutputStream baos = new ByteArrayOutputStream();
        try (PrintStream captureOut = new PrintStream(baos)) {
            System.setOut(captureOut);
            CohortCLI.main(new String[] { "-d", tmpFile.getAbsolutePath(), "-f", root.getId(), "-l", root.getName(), "-v", root.getVersion(), "-c", patient.getId(), "-s", "CQL", "-i", "src/test/resources/modelinfo/ig-with-target-modelinfo-0.0.1.xml" });
        } finally {
            System.setOut(originalOut);
        }
        String output = new String(baos.toByteArray());
        System.out.println(output);
        verify(1, getRequestedFor(urlEqualTo("/Patient/" + patient.getId() + "?_format=json")));
        verify(1, getRequestedFor(urlEqualTo("/Library/" + root.getId() + "?_format=json")));
        verify(1, getRequestedFor(urlEqualTo("/Library?url=%2FLibrary%2F" + helpers.getId() + "&_format=json")));
    } finally {
        tmpFile.delete();
    }
}

Example 10 with RelatedArtifact

use of org.hl7.fhir.r5.model.RelatedArtifact in project quality-measure-and-cohort-service by Alvearie.

the class R4LibraryDependencyGathererTest method withRelation.

private void withRelation(Library library, String relatedUrl) {
    RelatedArtifact relation = new RelatedArtifact().setType(RelatedArtifact.RelatedArtifactType.DEPENDSON).setResource(relatedUrl);
    library.addRelatedArtifact(relation);
}