Examples with RelatedArtifact org.hl7.fhir.r5.model.RelatedArtifact used on opensource projects

Example 21 with RelatedArtifact

use of org.hl7.fhir.r5.model.RelatedArtifact in project org.hl7.fhir.core by hapifhir.

the class LibraryRenderer method renderArtifact.

private void renderArtifact(XhtmlNode t, RelatedArtifact ra, Resource lib, boolean label, boolean display, boolean citation) throws IOException {
    XhtmlNode tr = t.tr();
    tr.td().tx(ra.getType().getDisplay());
    if (label) {
        tr.td().tx(ra.getLabel());
    }
    if (display) {
        tr.td().tx(ra.getDisplay());
    }
    if (citation) {
        tr.td().markdown(ra.getCitation(), "Citation");
    }
    if (ra.hasResource()) {
        renderCanonical(lib, tr.td(), ra.getResource());
    } else {
        renderAttachment(tr.td(), ra.getDocument(), false, 0, lib.getId());
    }
}

Example 22 with RelatedArtifact

use of org.hl7.fhir.r5.model.RelatedArtifact in project org.hl7.fhir.core by hapifhir.

the class LibraryRenderer method render.

public boolean render(XhtmlNode x, Library lib) throws FHIRFormatError, DefinitionException, IOException {
    if (lib.hasAuthor() || lib.hasEditor() || lib.hasReviewer() || lib.hasEndorser()) {
        boolean email = hasCT(lib.getAuthor(), "email") || hasCT(lib.getEditor(), "email") || hasCT(lib.getReviewer(), "email") || hasCT(lib.getEndorser(), "email");
        boolean phone = hasCT(lib.getAuthor(), "phone") || hasCT(lib.getEditor(), "phone") || hasCT(lib.getReviewer(), "phone") || hasCT(lib.getEndorser(), "phone");
        boolean url = hasCT(lib.getAuthor(), "url") || hasCT(lib.getEditor(), "url") || hasCT(lib.getReviewer(), "url") || hasCT(lib.getEndorser(), "url");
        x.h2().tx("Participants");
        XhtmlNode t = x.table("grid");
        for (ContactDetail cd : lib.getAuthor()) {
            participantRow(t, "Author", cd, email, phone, url);
        }
        for (ContactDetail cd : lib.getEditor()) {
            participantRow(t, "Editor", cd, email, phone, url);
        }
        for (ContactDetail cd : lib.getReviewer()) {
            participantRow(t, "Reviewer", cd, email, phone, url);
        }
        for (ContactDetail cd : lib.getEndorser()) {
            participantRow(t, "Endorser", cd, email, phone, url);
        }
    }
    if (lib.hasRelatedArtifact()) {
        x.h2().tx("Related Artifacts");
        XhtmlNode t = x.table("grid");
        boolean label = false;
        boolean display = false;
        boolean citation = false;
        for (RelatedArtifact ra : lib.getRelatedArtifact()) {
            label = label || ra.hasLabel();
            display = display || ra.hasDisplay();
            citation = citation || ra.hasCitation();
        }
        for (RelatedArtifact ra : lib.getRelatedArtifact()) {
            renderArtifact(t, ra, lib, label, display, citation);
        }
    }
    if (lib.hasParameter()) {
        x.h2().tx("Parameters");
        XhtmlNode t = x.table("grid");
        boolean doco = false;
        for (ParameterDefinition p : lib.getParameter()) {
            doco = doco || p.hasDocumentation();
        }
        for (ParameterDefinition p : lib.getParameter()) {
            renderParameter(t, p, doco);
        }
    }
    if (lib.hasDataRequirement()) {
        x.h2().tx("Data Requirements");
        for (DataRequirement p : lib.getDataRequirement()) {
            renderDataRequirement(x, p);
        }
    }
    if (lib.hasContent()) {
        x.h2().tx("Contents");
        boolean isCql = false;
        int counter = 0;
        for (Attachment att : lib.getContent()) {
            renderAttachment(x, att, isCql, counter, lib.getId());
            isCql = isCql || (att.hasContentType() && att.getContentType().startsWith("text/cql"));
            counter++;
        }
    }
    return false;
}

Example 23 with RelatedArtifact

use of org.hl7.fhir.r5.model.RelatedArtifact in project org.hl7.fhir.core by hapifhir.

the class LibraryRenderer method render.

public boolean render(XhtmlNode x, Library lib) throws FHIRFormatError, DefinitionException, IOException {
    if (lib.hasAuthor() || lib.hasEditor() || lib.hasReviewer() || lib.hasEndorser()) {
        boolean email = hasCT(lib.getAuthor(), "email") || hasCT(lib.getEditor(), "email") || hasCT(lib.getReviewer(), "email") || hasCT(lib.getEndorser(), "email");
        boolean phone = hasCT(lib.getAuthor(), "phone") || hasCT(lib.getEditor(), "phone") || hasCT(lib.getReviewer(), "phone") || hasCT(lib.getEndorser(), "phone");
        boolean url = hasCT(lib.getAuthor(), "url") || hasCT(lib.getEditor(), "url") || hasCT(lib.getReviewer(), "url") || hasCT(lib.getEndorser(), "url");
        x.h2().tx("Participants");
        XhtmlNode t = x.table("grid");
        for (ContactDetail cd : lib.getAuthor()) {
            participantRow(t, "Author", cd, email, phone, url);
        }
        for (ContactDetail cd : lib.getEditor()) {
            participantRow(t, "Editor", cd, email, phone, url);
        }
        for (ContactDetail cd : lib.getReviewer()) {
            participantRow(t, "Reviewer", cd, email, phone, url);
        }
        for (ContactDetail cd : lib.getEndorser()) {
            participantRow(t, "Endorser", cd, email, phone, url);
        }
    }
    if (lib.hasRelatedArtifact()) {
        x.h2().tx("Related Artifacts");
        XhtmlNode t = x.table("grid");
        boolean label = false;
        boolean display = false;
        boolean citation = false;
        for (RelatedArtifact ra : lib.getRelatedArtifact()) {
            label = label || ra.hasLabel();
            display = display || ra.hasDisplay();
            citation = citation || ra.hasCitation();
        }
        for (RelatedArtifact ra : lib.getRelatedArtifact()) {
            renderArtifact(t, ra, lib, label, display, citation);
        }
    }
    if (lib.hasParameter()) {
        x.h2().tx("Parameters");
        XhtmlNode t = x.table("grid");
        boolean doco = false;
        for (ParameterDefinition p : lib.getParameter()) {
            doco = doco || p.hasDocumentation();
        }
        for (ParameterDefinition p : lib.getParameter()) {
            renderParameter(t, p, doco);
        }
    }
    if (lib.hasDataRequirement()) {
        x.h2().tx("Data Requirements");
        for (DataRequirement p : lib.getDataRequirement()) {
            renderDataRequirement(x, p);
        }
    }
    if (lib.hasContent()) {
        x.h2().tx("Contents");
        boolean isCql = false;
        int counter = 0;
        for (Attachment att : lib.getContent()) {
            renderAttachment(x, att, isCql, counter, lib.getId());
            isCql = isCql || (att.hasContentType() && att.getContentType().startsWith("text/cql"));
            counter++;
        }
    }
    return false;
}

Example 24 with RelatedArtifact

use of org.hl7.fhir.r5.model.RelatedArtifact in project org.hl7.fhir.core by hapifhir.

the class LibraryRenderer method render.

public boolean render(XhtmlNode x, ResourceWrapper lib) throws FHIRFormatError, DefinitionException, IOException {
    PropertyWrapper authors = lib.getChildByName("author");
    PropertyWrapper editors = lib.getChildByName("editor");
    PropertyWrapper reviewers = lib.getChildByName("reviewer");
    PropertyWrapper endorsers = lib.getChildByName("endorser");
    if ((authors != null && authors.hasValues()) || (editors != null && editors.hasValues()) || (reviewers != null && reviewers.hasValues()) || (endorsers != null && endorsers.hasValues())) {
        boolean email = hasCT(authors, "email") || hasCT(editors, "email") || hasCT(reviewers, "email") || hasCT(endorsers, "email");
        boolean phone = hasCT(authors, "phone") || hasCT(editors, "phone") || hasCT(reviewers, "phone") || hasCT(endorsers, "phone");
        boolean url = hasCT(authors, "url") || hasCT(editors, "url") || hasCT(reviewers, "url") || hasCT(endorsers, "url");
        x.h2().tx("Participants");
        XhtmlNode t = x.table("grid");
        if (authors != null) {
            for (BaseWrapper cd : authors.getValues()) {
                participantRow(t, "Author", cd, email, phone, url);
            }
        }
        if (authors != null) {
            for (BaseWrapper cd : editors.getValues()) {
                participantRow(t, "Editor", cd, email, phone, url);
            }
        }
        if (authors != null) {
            for (BaseWrapper cd : reviewers.getValues()) {
                participantRow(t, "Reviewer", cd, email, phone, url);
            }
        }
        if (authors != null) {
            for (BaseWrapper cd : endorsers.getValues()) {
                participantRow(t, "Endorser", cd, email, phone, url);
            }
        }
    }
    PropertyWrapper artifacts = lib.getChildByName("relatedArtifact");
    if (artifacts != null && artifacts.hasValues()) {
        x.h2().tx("Related Artifacts");
        XhtmlNode t = x.table("grid");
        boolean label = false;
        boolean display = false;
        boolean citation = false;
        for (BaseWrapper ra : artifacts.getValues()) {
            label = label || ra.has("label");
            display = display || ra.has("display");
            citation = citation || ra.has("citation");
        }
        for (BaseWrapper ra : artifacts.getValues()) {
            renderArtifact(t, ra, lib, label, display, citation);
        }
    }
    PropertyWrapper parameters = lib.getChildByName("parameter");
    if (parameters != null && parameters.hasValues()) {
        x.h2().tx("Parameters");
        XhtmlNode t = x.table("grid");
        boolean doco = false;
        for (BaseWrapper p : parameters.getValues()) {
            doco = doco || p.has("documentation");
        }
        for (BaseWrapper p : parameters.getValues()) {
            renderParameter(t, p, doco);
        }
    }
    PropertyWrapper dataRequirements = lib.getChildByName("dataRequirement");
    if (dataRequirements != null && dataRequirements.hasValues()) {
        x.h2().tx("Data Requirements");
        for (BaseWrapper p : dataRequirements.getValues()) {
            renderDataRequirement(x, (DataRequirement) p.getBase());
        }
    }
    PropertyWrapper contents = lib.getChildByName("content");
    if (contents != null) {
        x.h2().tx("Contents");
        boolean isCql = false;
        int counter = 0;
        for (BaseWrapper p : contents.getValues()) {
            Attachment att = (Attachment) p.getBase();
            renderAttachment(x, att, isCql, counter, lib.getId());
            isCql = isCql || (att.hasContentType() && att.getContentType().startsWith("text/cql"));
            counter++;
        }
    }
    return false;
}

Example 25 with RelatedArtifact

use of org.hl7.fhir.r5.model.RelatedArtifact in project clinical_quality_language by cqframework.

the class DataRequirementsProcessorTest method TestDataRequirementsProcessorWithExpressions.

@Test
public void TestDataRequirementsProcessorWithExpressions() {
    CqlTranslatorOptions cqlTranslatorOptions = new CqlTranslatorOptions();
    cqlTranslatorOptions.getFormats().add(CqlTranslator.Format.JSON);
    try {
        Set<String> expressions = new HashSet<>();
        // TODO - add expressions to expressions
        // Active Ambulatory Opioid Rx");
        expressions.add("Conditions Indicating End of Life or With Limited Life Expectancy");
        CqlTranslator translator = createTranslator("OpioidCDS/cql/OpioidCDSCommon.cql", cqlTranslatorOptions);
        translator.toELM();
        assertTrue(translator.getErrors().isEmpty());
        libraryManager.cacheLibrary(translator.getTranslatedLibrary());
        DataRequirementsProcessor dqReqTrans = new DataRequirementsProcessor();
        org.hl7.fhir.r5.model.Library moduleDefinitionLibrary = dqReqTrans.gatherDataRequirements(libraryManager, translator.getTranslatedLibrary(), cqlTranslatorOptions, expressions, false);
        assertTrue(moduleDefinitionLibrary.getType().getCode("http://terminology.hl7.org/CodeSystem/library-type").equalsIgnoreCase("module-definition"));
        List<Extension> directReferenceCodes = moduleDefinitionLibrary.getExtensionsByUrl("http://hl7.org/fhir/us/cqfmeasures/StructureDefinition/cqfm-directReferenceCode");
        assertTrue(directReferenceCodes.size() == 4);
        Extension directReferenceCode = directReferenceCodes.get(0);
        Coding coding = directReferenceCode.getValueCoding();
        assertEquals("http://hl7.org/fhir/condition-category", coding.getSystem());
        assertEquals("encounter-diagnosis", coding.getCode());
        assertEquals("Encounter Diagnosis", coding.getDisplay());
        assertTrue(moduleDefinitionLibrary.getRelatedArtifact().size() == 6);
        RelatedArtifact conditionCategoryCodes = null;
        for (RelatedArtifact relatedArtifact : moduleDefinitionLibrary.getRelatedArtifact()) {
            if (relatedArtifact.getType() == RelatedArtifact.RelatedArtifactType.DEPENDSON && relatedArtifact.getResource() != null && relatedArtifact.getResource().equals("http://hl7.org/fhir/condition-category")) {
                conditionCategoryCodes = relatedArtifact;
                break;
            }
        }
        assertTrue(conditionCategoryCodes != null);
        assertTrue(moduleDefinitionLibrary.getParameter().size() == 1);
        ParameterDefinition conditionsIndicatingEndOfLife = null;
        for (ParameterDefinition parameter : moduleDefinitionLibrary.getParameter()) {
            if (parameter.getName().equals("Conditions Indicating End of Life or With Limited Life Expectancy")) {
                conditionsIndicatingEndOfLife = parameter;
                break;
            }
        }
        assertTrue(conditionsIndicatingEndOfLife != null);
        assertTrue(moduleDefinitionLibrary.getDataRequirement().size() == 3);
        DataRequirement diagnosisRequirement = null;
        for (DataRequirement requirement : moduleDefinitionLibrary.getDataRequirement()) {
            if (requirement.getType() == Enumerations.FHIRAllTypes.CONDITION && requirement.getCodeFilter().size() == 1) {
                DataRequirement.DataRequirementCodeFilterComponent cfc = requirement.getCodeFilterFirstRep();
                if (cfc.hasPath() && cfc.getPath().equals("category") && cfc.getCode().size() == 1 && cfc.getCodeFirstRep().hasCode() && cfc.getCodeFirstRep().getCode().equals("encounter-diagnosis")) {
                    diagnosisRequirement = requirement;
                    break;
                }
            }
        }
        assertTrue(diagnosisRequirement != null);
        FhirContext context = getFhirContext();
        IParser parser = context.newJsonParser();
        String moduleDefString = parser.setPrettyPrint(true).encodeResourceToString(moduleDefinitionLibrary);
        logger.debug(moduleDefString);
    } catch (IOException ioException) {
        ioException.printStackTrace();
    }
}