Examples with ValueSetExpansionContainsComponent org.hl7.fhir.r5.model.ValueSet.ValueSetExpansionContainsComponent used on opensource projects

Example 96 with ValueSetExpansionContainsComponent

use of org.hl7.fhir.r5.model.ValueSet.ValueSetExpansionContainsComponent in project org.hl7.fhir.core by hapifhir.

the class QuestionnaireBuilder method makeTypeList.

private ValueSet makeTypeList(StructureDefinition profile, List<TypeRefComponent> types, String path) {
    ValueSet vs = new ValueSet();
    vs.setName("Type options for " + path);
    vs.setDescription(vs.getName());
    vs.setStatus(PublicationStatus.ACTIVE);
    vs.setExpansion(new ValueSetExpansionComponent());
    vs.getExpansion().setIdentifier(Factory.createUUID());
    vs.getExpansion().setTimestampElement(DateTimeType.now());
    for (TypeRefComponent t : types) {
        ValueSetExpansionContainsComponent cc = vs.getExpansion().addContains();
        if (t.getCode().equals("Reference") && (t.hasTargetProfile() && t.getTargetProfile().startsWith("http://hl7.org/fhir/StructureDefinition/"))) {
            cc.setCode(t.getTargetProfile().substring(40));
            cc.setSystem("http://hl7.org/fhir/resource-types");
            cc.setDisplay(cc.getCode());
        } else {
            ProfileUtilities pu = new ProfileUtilities(context, null, null);
            StructureDefinition ps = null;
            if (t.hasTargetProfile())
                ps = pu.getProfile(profile, t.getTargetProfile());
            else if (t.hasProfile())
                ps = pu.getProfile(profile, t.getProfile());
            if (ps != null) {
                cc.setCode(t.getTargetProfile());
                cc.setDisplay(ps.getType());
                cc.setSystem("http://hl7.org/fhir/resource-types");
            } else {
                cc.setCode(t.getCode());
                cc.setDisplay(t.getCode());
                cc.setSystem("http://hl7.org/fhir/data-types");
            }
        }
        t.setUserData("text", cc.getCode());
    }
    return vs;
}

Example 97 with ValueSetExpansionContainsComponent

use of org.hl7.fhir.r5.model.ValueSet.ValueSetExpansionContainsComponent in project org.hl7.fhir.core by hapifhir.

the class StructureMapUtilities method buildCoding.

private Coding buildCoding(String uri, String code) throws FHIRException {
    // if we can get this as a valueSet, we will
    String system = null;
    String display = null;
    ValueSet vs = Utilities.noString(uri) ? null : worker.fetchResourceWithException(ValueSet.class, uri);
    if (vs != null) {
        ValueSetExpansionOutcome vse = worker.expandVS(vs, true, false);
        if (vse.getError() != null)
            throw new FHIRException(vse.getError());
        CommaSeparatedStringBuilder b = new CommaSeparatedStringBuilder();
        for (ValueSetExpansionContainsComponent t : vse.getValueset().getExpansion().getContains()) {
            if (t.hasCode())
                b.append(t.getCode());
            if (code.equals(t.getCode()) && t.hasSystem()) {
                system = t.getSystem();
                display = t.getDisplay();
                break;
            }
            if (code.equalsIgnoreCase(t.getDisplay()) && t.hasSystem()) {
                system = t.getSystem();
                display = t.getDisplay();
                break;
            }
        }
        if (system == null)
            throw new FHIRException("The code '" + code + "' is not in the value set '" + uri + "' (valid codes: " + b.toString() + "; also checked displays)");
    } else
        system = uri;
    ValidationResult vr = worker.validateCode(terminologyServiceOptions, system, code, null);
    if (vr != null && vr.getDisplay() != null)
        display = vr.getDisplay();
    return new Coding().setSystem(system).setCode(code).setDisplay(display);
}

Example 98 with ValueSetExpansionContainsComponent

use of org.hl7.fhir.r5.model.ValueSet.ValueSetExpansionContainsComponent in project org.hl7.fhir.core by hapifhir.

the class NarrativeGenerator method generateExpansion.

private boolean generateExpansion(XhtmlNode x, ValueSet vs, ValueSet src, boolean header, List<UsedConceptMap> maps) throws FHIRFormatError, DefinitionException, IOException {
    boolean hasExtensions = false;
    List<String> langs = new ArrayList<String>();
    if (header) {
        XhtmlNode h = x.addTag(getHeader());
        h.tx("Value Set Contents");
        if (IsNotFixedExpansion(vs))
            addMarkdown(x, vs.getDescription());
        if (vs.hasCopyright())
            generateCopyright(x, vs);
    }
    if (ToolingExtensions.hasExtension(vs.getExpansion(), "http://hl7.org/fhir/StructureDefinition/valueset-toocostly"))
        x.para().setAttribute("style", "border: maroon 1px solid; background-color: #FFCCCC; font-weight: bold; padding: 8px").addText(vs.getExpansion().getContains().isEmpty() ? tooCostlyNoteEmpty : tooCostlyNoteNotEmpty);
    else {
        Integer count = countMembership(vs);
        if (count == null)
            x.para().tx("This value set does not contain a fixed number of concepts");
        else
            x.para().tx("This value set contains " + count.toString() + " concepts");
    }
    generateVersionNotice(x, vs.getExpansion());
    CodeSystem allCS = null;
    boolean doLevel = false;
    for (ValueSetExpansionContainsComponent cc : vs.getExpansion().getContains()) {
        if (cc.hasContains()) {
            doLevel = true;
            break;
        }
    }
    // checkDoSystem(vs, src);
    boolean doSystem = true;
    boolean doDefinition = checkDoDefinition(vs.getExpansion().getContains());
    if (doSystem && allFromOneSystem(vs)) {
        doSystem = false;
        XhtmlNode p = x.para();
        p.tx("All codes from system ");
        allCS = context.fetchCodeSystem(vs.getExpansion().getContains().get(0).getSystem());
        String ref = null;
        if (allCS != null)
            ref = getCsRef(allCS);
        if (ref == null)
            p.code(vs.getExpansion().getContains().get(0).getSystem());
        else
            p.ah(prefix + ref).code(vs.getExpansion().getContains().get(0).getSystem());
    }
    XhtmlNode t = x.table("codes");
    XhtmlNode tr = t.tr();
    if (doLevel)
        tr.td().b().tx("Lvl");
    tr.td().attribute("style", "white-space:nowrap").b().tx("Code");
    if (doSystem)
        tr.td().b().tx("System");
    tr.td().b().tx("Display");
    if (doDefinition)
        tr.td().b().tx("Definition");
    addMapHeaders(tr, maps);
    for (ValueSetExpansionContainsComponent c : vs.getExpansion().getContains()) {
        addExpansionRowToTable(t, c, 0, doLevel, doSystem, doDefinition, maps, allCS, langs);
    }
    if (langs.size() > 0) {
        Collections.sort(langs);
        x.para().b().tx("Additional Language Displays");
        t = x.table("codes");
        tr = t.tr();
        tr.td().b().tx("Code");
        for (String lang : langs) tr.td().b().addText(describeLang(lang));
        for (ValueSetExpansionContainsComponent c : vs.getExpansion().getContains()) {
            addLanguageRow(c, t, langs);
        }
    }
    return hasExtensions;
}

Example 99 with ValueSetExpansionContainsComponent

use of org.hl7.fhir.r5.model.ValueSet.ValueSetExpansionContainsComponent in project org.hl7.fhir.core by hapifhir.

the class NarrativeGenerator method addLanguageRow.

private void addLanguageRow(ValueSetExpansionContainsComponent c, XhtmlNode t, List<String> langs) {
    XhtmlNode tr = t.tr();
    tr.td().addText(c.getCode());
    for (String lang : langs) {
        String d = null;
        for (Extension ext : c.getExtension()) {
            if (ToolingExtensions.EXT_TRANSLATION.equals(ext.getUrl())) {
                String l = ToolingExtensions.readStringExtension(ext, "lang");
                if (lang.equals(l))
                    d = ToolingExtensions.readStringExtension(ext, "content");
            }
        }
        tr.td().addText(d == null ? "" : d);
    }
    for (ValueSetExpansionContainsComponent cc : c.getContains()) {
        addLanguageRow(cc, t, langs);
    }
}

Example 100 with ValueSetExpansionContainsComponent

use of org.hl7.fhir.r5.model.ValueSet.ValueSetExpansionContainsComponent in project org.hl7.fhir.core by hapifhir.

the class NarrativeGenerator method addExpansionRowToTable.

private void addExpansionRowToTable(XhtmlNode t, ValueSetExpansionContainsComponent c, int i, boolean doLevel, boolean doSystem, boolean doDefinition, List<UsedConceptMap> maps, CodeSystem allCS, List<String> langs) {
    XhtmlNode tr = t.tr();
    XhtmlNode td = tr.td();
    String tgt = makeAnchor(c.getSystem(), c.getCode());
    td.an(tgt);
    if (doLevel) {
        td.addText(Integer.toString(i));
        td = tr.td();
    }
    String s = Utilities.padLeft("", '\u00A0', i * 2);
    td.attribute("style", "white-space:nowrap").addText(s);
    addCodeToTable(c.getAbstract(), c.getSystem(), c.getCode(), c.getDisplay(), td);
    if (doSystem) {
        td = tr.td();
        td.addText(c.getSystem());
    }
    td = tr.td();
    if (c.hasDisplayElement())
        td.addText(c.getDisplay());
    if (doDefinition) {
        CodeSystem cs = allCS;
        if (cs == null)
            cs = context.fetchCodeSystem(c.getSystem());
        td = tr.td();
        if (cs != null)
            td.addText(CodeSystemUtilities.getCodeDefinition(cs, c.getCode()));
    }
    for (UsedConceptMap m : maps) {
        td = tr.td();
        List<TargetElementComponentWrapper> mappings = findMappingsForCode(c.getCode(), m.getMap());
        boolean first = true;
        for (TargetElementComponentWrapper mapping : mappings) {
            if (!first)
                td.br();
            first = false;
            XhtmlNode span = td.span(null, mapping.comp.getEquivalence().toString());
            span.addText(getCharForEquivalence(mapping.comp));
            addRefToCode(td, mapping.group.getTarget(), m.getLink(), mapping.comp.getCode());
            if (!Utilities.noString(mapping.comp.getComment()))
                td.i().tx("(" + mapping.comp.getComment() + ")");
        }
    }
    for (Extension ext : c.getExtension()) {
        if (ToolingExtensions.EXT_TRANSLATION.equals(ext.getUrl())) {
            String lang = ToolingExtensions.readStringExtension(ext, "lang");
            if (!Utilities.noString(lang) && !langs.contains(lang))
                langs.add(lang);
        }
    }
    for (ValueSetExpansionContainsComponent cc : c.getContains()) {
        addExpansionRowToTable(t, cc, i + 1, doLevel, doSystem, doDefinition, maps, allCS, langs);
    }
}