Examples with PropertyWrapper org.hl7.fhir.r5.renderers.utils.BaseWrappers.PropertyWrapper used on opensource projects

Example 36 with PropertyWrapper

use of org.hl7.fhir.r5.renderers.utils.BaseWrappers.PropertyWrapper in project org.hl7.fhir.core by hapifhir.

the class NarrativeGenerator method filterGrandChildren.

private void filterGrandChildren(List<ElementDefinition> grandChildren, String string, PropertyWrapper prop) {
    List<ElementDefinition> toRemove = new ArrayList<ElementDefinition>();
    toRemove.addAll(grandChildren);
    for (BaseWrapper b : prop.getValues()) {
        List<ElementDefinition> list = new ArrayList<ElementDefinition>();
        for (ElementDefinition ed : toRemove) {
            PropertyWrapper p = b.getChildByName(tail(ed.getPath()));
            if (p != null && p.hasValues())
                list.add(ed);
        }
        toRemove.removeAll(list);
    }
    grandChildren.removeAll(toRemove);
}

Example 37 with PropertyWrapper

use of org.hl7.fhir.r5.renderers.utils.BaseWrappers.PropertyWrapper in project org.hl7.fhir.core by hapifhir.

the class NarrativeGenerator method generateDiagnosticReport.

public XhtmlNode generateDiagnosticReport(ResourceWrapper dr) {
    XhtmlNode root = new XhtmlNode(NodeType.Element, "div");
    XhtmlNode h2 = root.h2();
    displayCodeableConcept(h2, getProperty(dr, "code").value());
    h2.tx(" ");
    PropertyWrapper pw = getProperty(dr, "category");
    if (valued(pw)) {
        h2.tx("(");
        displayCodeableConcept(h2, pw.value());
        h2.tx(") ");
    }
    displayDate(h2, getProperty(dr, "issued").value());
    XhtmlNode tbl = root.table("grid");
    XhtmlNode tr = tbl.tr();
    XhtmlNode tdl = tr.td();
    XhtmlNode tdr = tr.td();
    populateSubjectSummary(tdl, getProperty(dr, "subject").value());
    tdr.b().tx("Report Details");
    tdr.br();
    pw = getProperty(dr, "perfomer");
    if (valued(pw)) {
        tdr.addText(pluralise("Performer", pw.getValues().size()) + ":");
        for (BaseWrapper v : pw.getValues()) {
            tdr.tx(" ");
            displayReference(tdr, v);
        }
        tdr.br();
    }
    pw = getProperty(dr, "identifier");
    if (valued(pw)) {
        tdr.addText(pluralise("Identifier", pw.getValues().size()) + ":");
        for (BaseWrapper v : pw.getValues()) {
            tdr.tx(" ");
            displayIdentifier(tdr, v);
        }
        tdr.br();
    }
    pw = getProperty(dr, "request");
    if (valued(pw)) {
        tdr.addText(pluralise("Request", pw.getValues().size()) + ":");
        for (BaseWrapper v : pw.getValues()) {
            tdr.tx(" ");
            displayReferenceId(tdr, v);
        }
        tdr.br();
    }
    pw = getProperty(dr, "result");
    if (valued(pw)) {
        List<ObservationNode> observations = fetchObservations(pw.getValues());
        buildObservationsTable(root, observations);
    }
    pw = getProperty(dr, "conclusion");
    if (valued(pw))
        displayText(root.para(), pw.value());
    pw = getProperty(dr, "result");
    if (valued(pw)) {
        XhtmlNode p = root.para();
        p.b().tx("Coded Diagnoses :");
        for (BaseWrapper v : pw.getValues()) {
            tdr.tx(" ");
            displayCodeableConcept(tdr, v);
        }
    }
    return root;
}

Example 38 with PropertyWrapper

use of org.hl7.fhir.r5.renderers.utils.BaseWrappers.PropertyWrapper in project org.hl7.fhir.core by hapifhir.

the class NarrativeGenerator method addObservationToTable.

private void addObservationToTable(XhtmlNode tr, ResourceWrapper obs, int i) {
    // TODO Auto-generated method stub
    // code (+bodysite)
    XhtmlNode td = tr.td();
    PropertyWrapper pw = getProperty(obs, "result");
    if (valued(pw)) {
        displayCodeableConcept(td, pw.value());
    }
    pw = getProperty(obs, "bodySite");
    if (valued(pw)) {
        td.tx(" (");
        displayCodeableConcept(td, pw.value());
        td.tx(")");
    }
    // value / dataAbsentReason (in red)
    td = tr.td();
    pw = getProperty(obs, "value[x]");
    if (valued(pw)) {
        if (pw.getTypeCode().equals("CodeableConcept"))
            displayCodeableConcept(td, pw.value());
        else if (pw.getTypeCode().equals("string"))
            displayText(td, pw.value());
        else
            td.addText(pw.getTypeCode() + " not rendered yet");
    }
    // units
    td = tr.td();
    td.tx("to do");
    // reference range
    td = tr.td();
    td.tx("to do");
    // flags (status other than F, interpretation, )
    td = tr.td();
    td.tx("to do");
    // issued if different to DR
    td = tr.td();
    td.tx("to do");
}

Example 39 with PropertyWrapper

use of org.hl7.fhir.r5.renderers.utils.BaseWrappers.PropertyWrapper in project org.hl7.fhir.core by hapifhir.

the class NarrativeGenerator method generateResourceSummary.

private void generateResourceSummary(XhtmlNode x, ResourceWrapper res, boolean textAlready, boolean showCodeDetails, ResourceContext rc) throws FHIRException, UnsupportedEncodingException, IOException {
    if (!textAlready) {
        XhtmlNode div = res.getNarrative();
        if (div != null) {
            if (div.allChildrenAreText())
                x.getChildNodes().addAll(div.getChildNodes());
            if (div.getChildNodes().size() == 1 && div.getChildNodes().get(0).allChildrenAreText())
                x.getChildNodes().addAll(div.getChildNodes().get(0).getChildNodes());
        }
        x.tx("Generated Summary: ");
    }
    String path = res.getName();
    StructureDefinition profile = context.fetchResource(StructureDefinition.class, path);
    if (profile == null)
        x.tx("unknown resource " + path);
    else {
        boolean firstElement = true;
        boolean last = false;
        for (PropertyWrapper p : res.children()) {
            ElementDefinition child = getElementDefinition(profile.getSnapshot().getElement(), path + "." + p.getName(), p);
            if (p.getValues().size() > 0 && p.getValues().get(0) != null && child != null && isPrimitive(child) && includeInSummary(child)) {
                if (firstElement)
                    firstElement = false;
                else if (last)
                    x.tx("; ");
                boolean first = true;
                last = false;
                for (BaseWrapper v : p.getValues()) {
                    if (first)
                        first = false;
                    else if (last)
                        x.tx(", ");
                    last = displayLeaf(res, v, child, x, p.getName(), showCodeDetails, rc) || last;
                }
            }
        }
    }
}

Example 40 with PropertyWrapper

use of org.hl7.fhir.r5.renderers.utils.BaseWrappers.PropertyWrapper in project org.hl7.fhir.core by hapifhir.

the class NarrativeGenerator method splitExtensions.

private List<PropertyWrapper> splitExtensions(StructureDefinition profile, List<PropertyWrapper> children) throws UnsupportedEncodingException, IOException, FHIRException {
    List<PropertyWrapper> results = new ArrayList<PropertyWrapper>();
    Map<String, PropertyWrapper> map = new HashMap<String, PropertyWrapper>();
    for (PropertyWrapper p : children) if (p.getName().equals("extension") || p.getName().equals("modifierExtension")) {
        // we're going to split these up, and create a property for each url
        if (p.hasValues()) {
            for (BaseWrapper v : p.getValues()) {
                Extension ex = (Extension) v.getBase();
                String url = ex.getUrl();
                StructureDefinition ed = context.fetchResource(StructureDefinition.class, url);
                if (p.getName().equals("modifierExtension") && ed == null)
                    throw new DefinitionException("Unknown modifier extension " + url);
                PropertyWrapper pe = map.get(p.getName() + "[" + url + "]");
                if (pe == null) {
                    if (ed == null) {
                        if (url.startsWith("http://hl7.org/fhir"))
                            throw new DefinitionException("unknown extension " + url);
                        System.out.println("unknown extension " + url);
                        pe = new PropertyWrapperDirect(new Property(p.getName() + "[" + url + "]", p.getTypeCode(), p.getDefinition(), p.getMinCardinality(), p.getMaxCardinality(), ex));
                    } else {
                        ElementDefinition def = ed.getSnapshot().getElement().get(0);
                        pe = new PropertyWrapperDirect(new Property(p.getName() + "[" + url + "]", "Extension", def.getDefinition(), def.getMin(), def.getMax().equals("*") ? Integer.MAX_VALUE : Integer.parseInt(def.getMax()), ex));
                        ((PropertyWrapperDirect) pe).wrapped.setStructure(ed);
                    }
                    results.add(pe);
                } else
                    pe.getValues().add(v);
            }
        }
    } else
        results.add(p);
    return results;
}