Examples with RCMRMT030101UK04EhrExtract org.hl7.v3.RCMRMT030101UK04EhrExtract used on opensource projects

Example 6 with RCMRMT030101UK04EhrExtract

use of org.hl7.v3.RCMRMT030101UK04EhrExtract in project nia-patient-switching-standard-adaptor by NHSDigital.

the class BloodPressureMapper method mapObservation.

private Observation mapObservation(RCMRMT030101UK04EhrExtract ehrExtract, RCMRMT030101UK04EhrComposition ehrComposition, RCMRMT030101UK04CompoundStatement compoundStatement, Patient patient, List<Encounter> encounters, String practiseCode) {
    var observationStatements = getObservationStatementsFromCompoundStatement(compoundStatement);
    var id = compoundStatement.getId().get(0);
    Observation observation = new Observation().addIdentifier(buildIdentifier(id.getRoot(), practiseCode)).setStatus(ObservationStatus.FINAL).setCode(getCode(compoundStatement.getCode())).setComponent(getComponent(observationStatements)).setComment(getComment(observationStatements, getNarrativeStatementsFromCompoundStatement(compoundStatement))).setSubject(new Reference(patient)).setIssuedElement(getIssued(ehrExtract, ehrComposition)).addPerformer(getParticipantReference(compoundStatement.getParticipant(), ehrComposition));
    observation.setId(id.getRoot());
    observation.getMeta().getProfile().add(new UriType(META_PROFILE));
    addEffective(observation, getEffective(compoundStatement.getEffectiveTime(), compoundStatement.getAvailabilityTime()));
    addContextToObservation(observation, encounters, ehrComposition);
    return observation;
}

Example 7 with RCMRMT030101UK04EhrExtract

use of org.hl7.v3.RCMRMT030101UK04EhrExtract in project nia-patient-switching-standard-adaptor by NHSDigital.

the class ConsultationListMapper method mapToConsultation.

public ListResource mapToConsultation(RCMRMT030101UK04EhrExtract ehrExtract, Encounter encounter) {
    ListResource consultation = new ListResource();
    consultation.setStatus(ListStatus.CURRENT).setMode(ListMode.SNAPSHOT).setTitle(getConsultationTitle(encounter.getType())).setCode(CodeableConceptUtils.createCodeableConcept(CONSULTATION_CODE_CODE, LIST_CODE_SYSTEM, CONSULTATION_CODE_DISPLAY, null)).setSubject(encounter.getSubject()).setDateElement(getConsultationDate(encounter.getPeriod(), ehrExtract)).setOrderedBy(CodeableConceptUtils.createCodeableConcept(LIST_ORDERED_BY_CODE, LIST_ORDERED_BY_SYSTEM, LIST_ORDERED_BY_DISPLAY, null)).setEncounter(new Reference(encounter)).setMeta(generateMeta(LIST_META_PROFILE)).setId(getConsultationId(encounter.getId()));
    return consultation;
}

Example 8 with RCMRMT030101UK04EhrExtract

use of org.hl7.v3.RCMRMT030101UK04EhrExtract in project nia-patient-switching-standard-adaptor by NHSDigital.

the class DocumentReferenceMapper method mapDocumentReference.

private DocumentReference mapDocumentReference(RCMRMT030101UK04NarrativeStatement narrativeStatement, RCMRMT030101UK04EhrComposition ehrComposition, Patient patient, RCMRMT030101UK04EhrExtract ehrExtract, List<Encounter> encounterList, Organization organization) {
    DocumentReference documentReference = new DocumentReference();
    var id = narrativeStatement.getReference().get(0).getReferredToExternalDocument().getId().getRoot();
    documentReference.addIdentifier(buildIdentifier(id, organization.getIdentifierFirstRep().getValue()));
    documentReference.setId(id);
    documentReference.getMeta().addProfile(META_PROFILE);
    documentReference.setStatus(DocumentReferenceStatus.CURRENT);
    documentReference.setType(getType(narrativeStatement));
    documentReference.setSubject(new Reference(patient));
    documentReference.setIndexedElement(getIndexed(ehrExtract));
    documentReference.setDescription(buildDescription(narrativeStatement));
    documentReference.setCustodian(new Reference(organization));
    getAuthor(narrativeStatement, ehrComposition).ifPresent(documentReference::addAuthor);
    if (narrativeStatement.hasAvailabilityTime() && narrativeStatement.getAvailabilityTime().hasValue()) {
        documentReference.setCreatedElement(DateFormatUtil.parseToDateTimeType(narrativeStatement.getAvailabilityTime().getValue()));
    }
    var encounterReference = encounterList.stream().filter(encounter -> encounter.getId().equals(ehrComposition.getId().getRoot())).findFirst().map(Reference::new);
    if (encounterReference.isPresent()) {
        DocumentReference.DocumentReferenceContextComponent documentReferenceContextComponent = new DocumentReference.DocumentReferenceContextComponent().setEncounter(encounterReference.get());
        documentReference.setContext(documentReferenceContextComponent);
    }
    setContentAttachments(documentReference, narrativeStatement);
    return documentReference;
}

Example 9 with RCMRMT030101UK04EhrExtract

use of org.hl7.v3.RCMRMT030101UK04EhrExtract in project nia-patient-switching-standard-adaptor by NHSDigital.

the class ConditionMapperTest method testConditionIsMappedCorrectlyWithContext.

@Test
public void testConditionIsMappedCorrectlyWithContext() {
    when(dateTimeMapper.mapDateTime(any())).thenReturn(EHR_EXTRACT_AVAILABILITY_DATETIME);
    final List<Encounter> encounters = List.of((Encounter) new Encounter().setId(ENCOUNTER_ID));
    final RCMRMT030101UK04EhrExtract ehrExtract = unmarshallEhrExtract("linkset_valid.xml");
    final List<Condition> conditions = conditionMapper.mapResources(ehrExtract, patient, encounters, PRACTISE_CODE);
    assertThat(conditions).isNotEmpty();
    assertThat(conditions.get(0).getContext().getResource().getIdElement().getValue()).isEqualTo(ENCOUNTER_ID);
}

Example 10 with RCMRMT030101UK04EhrExtract

use of org.hl7.v3.RCMRMT030101UK04EhrExtract in project nia-patient-switching-standard-adaptor by NHSDigital.

the class ConditionMapperTest method testConditionIsMappedCorrectlyWithNamedStatementRef.

@Test
public void testConditionIsMappedCorrectlyWithNamedStatementRef() {
    when(dateTimeMapper.mapDateTime(any(String.class))).thenCallRealMethod();
    var codeableConcept = new CodeableConcept().addCoding(new Coding().setDisplay(CODING_DISPLAY));
    when(codeableConceptMapper.mapToCodeableConcept(any())).thenReturn(codeableConcept);
    final RCMRMT030101UK04EhrExtract ehrExtract = unmarshallEhrExtract("linkset_valid_with_reference.xml");
    final List<Condition> conditions = conditionMapper.mapResources(ehrExtract, patient, List.of(), PRACTISE_CODE);
    conditionMapper.addReferences(buildBundleWithNamedStatementObservation(), conditions, ehrExtract);
    assertThat(conditions.get(0).getCode().getCodingFirstRep().getDisplay()).isEqualTo(CODING_DISPLAY);
}