Example 1 with DccMetadata
use of org.icgc.dcc.song.importer.model.DccMetadata in project SONG by overture-stack.
the class DccMetadataFetcher method processDccMetadata.
private Set<File> processDccMetadata(DccMetadata dccMetadata, Map<String, List<PortalFileMetadata>> objectIdMap) {
val objectId = dccMetadata.getId();
val portalFileMetadatasForObjectId = objectIdMap.get(objectId);
val file = simpleDccStorageClient.getFile(objectId, "N/A", dccMetadata.getFileName());
return portalFileMetadatasForObjectId.stream().map(x -> buildFile(dccMetadata, file, x)).collect(toImmutableSet());
}
Also used :
lombok.val(lombok.val)
PortalFileMetadata(org.icgc.dcc.song.importer.model.PortalFileMetadata)
Collectors.toImmutableSet(org.icgc.dcc.common.core.util.stream.Collectors.toImmutableSet)
DccMetadataDao(org.icgc.dcc.song.importer.dao.dcc.DccMetadataDao)
File(org.icgc.dcc.song.server.model.entity.File)
SneakyThrows(lombok.SneakyThrows)
Files(java.nio.file.Files)
NonNull(lombok.NonNull)
FileConverter.convertToFile(org.icgc.dcc.song.importer.convert.FileConverter.convertToFile)
Collection(java.util.Collection)
lombok.val(lombok.val)
Collectors.groupingBy(java.util.stream.Collectors.groupingBy)
Set(java.util.Set)
DccMetadata(org.icgc.dcc.song.importer.model.DccMetadata)
List(java.util.List)
CounterMonitor.newMonitor(org.icgc.dcc.song.importer.measurement.CounterMonitor.newMonitor)
SimpleDccStorageClient.calcMd5Sum(org.icgc.dcc.song.importer.storage.SimpleDccStorageClient.calcMd5Sum)
Map(java.util.Map)
DccMetadataConverter(org.icgc.dcc.song.importer.convert.DccMetadataConverter)
SimpleDccStorageClient(org.icgc.dcc.song.importer.storage.SimpleDccStorageClient)
Aggregations
Files (java.nio.file.Files)1
Collection (java.util.Collection)1
List (java.util.List)1
Map (java.util.Map)1
Set (java.util.Set)1
Collectors.groupingBy (java.util.stream.Collectors.groupingBy)1
NonNull (lombok.NonNull)1
SneakyThrows (lombok.SneakyThrows)1
lombok.val (lombok.val)1
Collectors.toImmutableSet (org.icgc.dcc.common.core.util.stream.Collectors.toImmutableSet)1
DccMetadataConverter (org.icgc.dcc.song.importer.convert.DccMetadataConverter)1
FileConverter.convertToFile (org.icgc.dcc.song.importer.convert.FileConverter.convertToFile)1
DccMetadataDao (org.icgc.dcc.song.importer.dao.dcc.DccMetadataDao)1
CounterMonitor.newMonitor (org.icgc.dcc.song.importer.measurement.CounterMonitor.newMonitor)1
DccMetadata (org.icgc.dcc.song.importer.model.DccMetadata)1
PortalFileMetadata (org.icgc.dcc.song.importer.model.PortalFileMetadata)1
SimpleDccStorageClient (org.icgc.dcc.song.importer.storage.SimpleDccStorageClient)1
SimpleDccStorageClient.calcMd5Sum (org.icgc.dcc.song.importer.storage.SimpleDccStorageClient.calcMd5Sum)1
File (org.icgc.dcc.song.server.model.entity.File)1
