Example 6 with FileListEntry
use of org.jabref.gui.filelist.FileListEntry in project jabref by JabRef.
the class SynchronizeFileField method run.
@Override
public void run() {
if (!goOn) {
panel.output(Localization.lang("This operation requires one or more entries to be selected."));
return;
}
entriesChangedCount = 0;
panel.frame().setProgressBarValue(0);
panel.frame().setProgressBarVisible(true);
// autoSet takes 10 (?) times longer than checkExisting
int weightAutoSet = 10;
int progressBarMax = (autoSet ? weightAutoSet * sel.size() : 0) + (checkExisting ? sel.size() : 0);
panel.frame().setProgressBarMaximum(progressBarMax);
int progress = 0;
final NamedCompound ce = new NamedCompound(Localization.lang("Automatically set file links"));
Set<BibEntry> changedEntries = new HashSet<>();
// First we try to autoset fields
if (autoSet) {
List<BibEntry> entries = new ArrayList<>(sel);
// Start the automatically setting process:
Runnable r = AutoSetLinks.autoSetLinks(entries, ce, changedEntries, null, panel.getBibDatabaseContext(), null, null);
JabRefExecutorService.INSTANCE.executeAndWait(r);
}
progress += sel.size() * weightAutoSet;
panel.frame().setProgressBarValue(progress);
// The following loop checks all external links that are already set.
if (checkExisting) {
boolean removeAllBroken = false;
mainLoop: for (BibEntry aSel : sel) {
panel.frame().setProgressBarValue(progress++);
final Optional<String> old = aSel.getField(FieldName.FILE);
// Check if a extension is set:
if (old.isPresent() && !(old.get().isEmpty())) {
FileListTableModel tableModel = new FileListTableModel();
tableModel.setContentDontGuessTypes(old.get());
for (int j = 0; j < tableModel.getRowCount(); j++) {
FileListEntry flEntry = tableModel.getEntry(j);
LinkedFile field = flEntry.toParsedFileField();
// See if the link looks like an URL:
if (field.isOnlineLink()) {
// Don't check the remote file.
continue;
// TODO: should there be an option to check remote links?
}
// A variable to keep track of whether this link gets deleted:
boolean deleted = false;
// Get an absolute path representation:
Optional<Path> file = field.findIn(panel.getBibDatabaseContext(), Globals.prefs.getFileDirectoryPreferences());
if ((!file.isPresent()) || !Files.exists(file.get())) {
int answer;
if (removeAllBroken) {
// We should delete this link.
answer = 2;
} else {
answer = JOptionPane.showOptionDialog(panel.frame(), Localization.lang("<HTML>Could not find file '%0'<BR>linked from entry '%1'</HTML>", flEntry.getLink(), aSel.getCiteKeyOptional().orElse(Localization.lang("undefined"))), Localization.lang("Broken link"), JOptionPane.YES_NO_CANCEL_OPTION, JOptionPane.QUESTION_MESSAGE, null, brokenLinkOptions, brokenLinkOptions[0]);
}
switch(answer) {
case 1:
// Assign new file.
FileListEntryEditor flEditor = new FileListEntryEditor(panel.frame(), flEntry, false, true, panel.getBibDatabaseContext());
flEditor.setVisible(true, true);
break;
case 2:
// Clear field:
tableModel.removeEntry(j);
// Make sure we don't investigate this link further.
deleted = true;
// Step back in the iteration, because we removed an entry.
j--;
break;
case 3:
// Clear field:
tableModel.removeEntry(j);
// Make sure we don't investigate this link further.
deleted = true;
// Step back in the iteration, because we removed an entry.
j--;
// Notify for further cases.
removeAllBroken = true;
break;
default:
// Cancel
break mainLoop;
}
}
// Unless we deleted this link, see if its file type is recognized:
if (!deleted && flEntry.getType().isPresent() && (flEntry.getType().get() instanceof UnknownExternalFileType)) {
String[] options = new String[] { Localization.lang("Define '%0'", flEntry.getType().get().getName()), Localization.lang("Change file type"), Localization.lang("Cancel") };
String defOption = options[0];
int answer = JOptionPane.showOptionDialog(panel.frame(), Localization.lang("One or more file links are of the type '%0', which is undefined. What do you want to do?", flEntry.getType().get().getName()), Localization.lang("Undefined file type"), JOptionPane.YES_NO_CANCEL_OPTION, JOptionPane.QUESTION_MESSAGE, null, options, defOption);
if (answer == JOptionPane.CANCEL_OPTION) {
// User doesn't want to handle this unknown link type.
} else if (answer == JOptionPane.YES_OPTION) {
// User wants to define the new file type. Show the dialog:
ExternalFileType newType = new ExternalFileType(flEntry.getType().get().getName(), "", "", "", "new", IconTheme.JabRefIcon.FILE.getSmallIcon());
ExternalFileTypeEntryEditor editor = new ExternalFileTypeEntryEditor(panel.frame(), newType);
editor.setVisible(true);
if (editor.okPressed()) {
// Get the old list of types, add this one, and update the list in prefs:
List<ExternalFileType> fileTypes = new ArrayList<>(ExternalFileTypes.getInstance().getExternalFileTypeSelection());
fileTypes.add(newType);
Collections.sort(fileTypes);
ExternalFileTypes.getInstance().setExternalFileTypes(fileTypes);
panel.getMainTable().repaint();
}
} else {
// User wants to change the type of this link.
// First get a model of all file links for this entry:
FileListEntryEditor editor = new FileListEntryEditor(panel.frame(), flEntry, false, true, panel.getBibDatabaseContext());
editor.setVisible(true, false);
}
}
}
if (!tableModel.getStringRepresentation().equals(old.orElse(null))) {
// The table has been modified. Store the change:
String toSet = tableModel.getStringRepresentation();
if (toSet.isEmpty()) {
ce.addEdit(new UndoableFieldChange(aSel, FieldName.FILE, old.orElse(null), null));
aSel.clearField(FieldName.FILE);
} else {
ce.addEdit(new UndoableFieldChange(aSel, FieldName.FILE, old.orElse(null), toSet));
aSel.setField(FieldName.FILE, toSet);
}
changedEntries.add(aSel);
}
}
}
}
if (!changedEntries.isEmpty()) {
// Add the undo edit:
ce.end();
panel.getUndoManager().addEdit(ce);
panel.markBaseChanged();
entriesChangedCount = changedEntries.size();
}
}
Also used :
BibEntry(org.jabref.model.entry.BibEntry)
FileListTableModel(org.jabref.gui.filelist.FileListTableModel)
LinkedFile(org.jabref.model.entry.LinkedFile)
ExternalFileTypeEntryEditor(org.jabref.gui.externalfiletype.ExternalFileTypeEntryEditor)
Optional(java.util.Optional)
ArrayList(java.util.ArrayList)
FileListEntry(org.jabref.gui.filelist.FileListEntry)
UnknownExternalFileType(org.jabref.gui.externalfiletype.UnknownExternalFileType)
UnknownExternalFileType(org.jabref.gui.externalfiletype.UnknownExternalFileType)
ExternalFileType(org.jabref.gui.externalfiletype.ExternalFileType)
FileListEntryEditor(org.jabref.gui.filelist.FileListEntryEditor)
NamedCompound(org.jabref.gui.undo.NamedCompound)
UndoableFieldChange(org.jabref.gui.undo.UndoableFieldChange)
HashSet(java.util.HashSet)
Example 7 with FileListEntry
use of org.jabref.gui.filelist.FileListEntry in project jabref by JabRef.
the class DroppedFileHandler method doLink.
/**
* Make a extension to the file.
*
* @param entry The entry to extension from.
* @param fileType The FileType associated with the file.
* @param filename The path to the file.
* @param edits An NamedCompound action this action is to be added to. If none
* is given, the edit is added to the panel's undoManager.
*/
private void doLink(BibEntry entry, ExternalFileType fileType, String filename, boolean avoidDuplicate, NamedCompound edits) {
Optional<String> oldValue = entry.getField(FieldName.FILE);
FileListTableModel tm = new FileListTableModel();
oldValue.ifPresent(tm::setContent);
// If avoidDuplicate==true, we should check if this file is already linked:
if (avoidDuplicate) {
// For comparison, find the absolute filename:
List<Path> dirs = panel.getBibDatabaseContext().getFileDirectoriesAsPaths(Globals.prefs.getFileDirectoryPreferences());
String absFilename;
if (new File(filename).isAbsolute() || dirs.isEmpty()) {
absFilename = filename;
} else {
Optional<Path> file = FileHelper.expandFilenameAsPath(filename, dirs);
if (file.isPresent()) {
absFilename = file.get().toAbsolutePath().toString();
} else {
// This shouldn't happen based on the old code, so maybe one should set it something else?
absFilename = "";
}
}
LOGGER.debug("absFilename: " + absFilename);
for (int i = 0; i < tm.getRowCount(); i++) {
FileListEntry flEntry = tm.getEntry(i);
// Find the absolute filename for this existing link:
String absName = flEntry.toParsedFileField().findIn(dirs).map(Path::toAbsolutePath).map(Path::toString).orElse(null);
LOGGER.debug("absName: " + absName);
// If the filenames are equal, we don't need to link, so we simply return:
if (absFilename.equals(absName)) {
return;
}
}
}
tm.addEntry(tm.getRowCount(), new FileListEntry("", filename, fileType));
String newValue = tm.getStringRepresentation();
UndoableFieldChange edit = new UndoableFieldChange(entry, FieldName.FILE, oldValue.orElse(null), newValue);
entry.setField(FieldName.FILE, newValue);
if (edits == null) {
panel.getUndoManager().addEdit(edit);
} else {
edits.addEdit(edit);
}
}
Also used :
Path(java.nio.file.Path)
FileListTableModel(org.jabref.gui.filelist.FileListTableModel)
FileListEntry(org.jabref.gui.filelist.FileListEntry)
UndoableFieldChange(org.jabref.gui.undo.UndoableFieldChange)
File(java.io.File)
Example 8 with FileListEntry
use of org.jabref.gui.filelist.FileListEntry in project jabref by JabRef.
the class EntryFromFileCreator method addFileInfo.
private void addFileInfo(BibEntry entry, File file) {
Optional<ExternalFileType> fileType = ExternalFileTypes.getInstance().getExternalFileTypeByExt(externalFileType.getFieldName());
List<Path> possibleFilePaths = JabRefGUI.getMainFrame().getCurrentBasePanel().getBibDatabaseContext().getFileDirectoriesAsPaths(Globals.prefs.getFileDirectoryPreferences());
Path shortenedFileName = FileUtil.shortenFileName(file.toPath(), possibleFilePaths);
FileListEntry fileListEntry = new FileListEntry("", shortenedFileName.toString(), fileType);
FileListTableModel model = new FileListTableModel();
model.addEntry(0, fileListEntry);
entry.setField(FieldName.FILE, model.getStringRepresentation());
}
Also used :
ExternalFileType(org.jabref.gui.externalfiletype.ExternalFileType)
Path(java.nio.file.Path)
FileListTableModel(org.jabref.gui.filelist.FileListTableModel)
FileListEntry(org.jabref.gui.filelist.FileListEntry)
Example 9 with FileListEntry
use of org.jabref.gui.filelist.FileListEntry in project jabref by JabRef.
the class MainTableSelectionListener method showIconRightClickMenu.
/**
* Process popup trigger events occurring on an icon cell in the table. Show a menu where the user can choose which
* external resource to open for the entry. If no relevant external resources exist, let the normal popup trigger
* handler do its thing instead.
*
* @param e The mouse event defining this popup trigger.
* @param row The row where the event occurred.
* @param column the MainTableColumn associated with this table cell.
*/
private void showIconRightClickMenu(MouseEvent e, int row, MainTableColumn column) {
BibEntry entry = tableRows.get(row);
JPopupMenu menu = new JPopupMenu();
boolean showDefaultPopup = true;
// field that can specify a list of links:
if (!column.getBibtexFields().isEmpty()) {
for (String field : column.getBibtexFields()) {
if (FieldName.FILE.equals(field)) {
// We use a FileListTableModel to parse the field content:
FileListTableModel fileList = new FileListTableModel();
entry.getField(field).ifPresent(fileList::setContent);
for (int i = 0; i < fileList.getRowCount(); i++) {
FileListEntry flEntry = fileList.getEntry(i);
if (column.isFileFilter() && (!flEntry.getType().get().getName().equalsIgnoreCase(column.getColumnName()))) {
continue;
}
String description = flEntry.getDescription();
if ((description == null) || (description.trim().isEmpty())) {
description = flEntry.getLink();
}
menu.add(new ExternalFileMenuItem(panel.frame(), entry, description, flEntry.getLink(), flEntry.getType().get().getIcon(), panel.getBibDatabaseContext(), flEntry.getType()));
showDefaultPopup = false;
}
} else {
if (SpecialField.isSpecialField(column.getColumnName())) {
// full pop should be shown as left click already shows short popup
showDefaultPopup = true;
} else {
Optional<String> content = entry.getField(field);
if (content.isPresent()) {
Icon icon;
JLabel iconLabel = GUIGlobals.getTableIcon(field);
if (iconLabel == null) {
icon = IconTheme.JabRefIcon.FILE.getIcon();
} else {
icon = iconLabel.getIcon();
}
menu.add(new ExternalFileMenuItem(panel.frame(), entry, content.get(), content.get(), icon, panel.getBibDatabaseContext(), field));
if (field.equals(FieldName.DOI)) {
menu.add(new CopyDoiUrlAction(content.get()));
}
showDefaultPopup = false;
}
}
}
}
if (showDefaultPopup) {
processPopupTrigger(e, row);
} else {
menu.show(table, e.getX(), e.getY());
}
}
}
Also used :
BibEntry(org.jabref.model.entry.BibEntry)
FileListTableModel(org.jabref.gui.filelist.FileListTableModel)
ExternalFileMenuItem(org.jabref.gui.externalfiletype.ExternalFileMenuItem)
FileListEntry(org.jabref.gui.filelist.FileListEntry)
JLabel(javax.swing.JLabel)
JPopupMenu(javax.swing.JPopupMenu)
CopyDoiUrlAction(org.jabref.gui.actions.CopyDoiUrlAction)
Icon(javax.swing.Icon)
Example 10 with FileListEntry
use of org.jabref.gui.filelist.FileListEntry in project jabref by JabRef.
the class PdfImporter method doXMPImport.
private void doXMPImport(String fileName, List<BibEntry> res) {
List<BibEntry> localRes = new ArrayList<>();
PdfXmpImporter importer = new PdfXmpImporter(Globals.prefs.getXMPPreferences());
Path filePath = Paths.get(fileName);
ParserResult result = importer.importDatabase(filePath, Globals.prefs.getDefaultEncoding());
if (result.hasWarnings()) {
frame.showMessage(result.getErrorMessage());
}
localRes.addAll(result.getDatabase().getEntries());
BibEntry entry;
if (localRes.isEmpty()) {
// import failed -> generate default entry
LOGGER.info("Import failed");
createNewBlankEntry(fileName).ifPresent(res::add);
return;
}
// only one entry is imported
entry = localRes.get(0);
// insert entry to database and link file
panel.getDatabase().insertEntry(entry);
panel.markBaseChanged();
FileListTableModel tm = new FileListTableModel();
Path toLink = Paths.get(fileName);
// Get a list of file directories:
List<Path> dirsS = panel.getBibDatabaseContext().getFileDirectoriesAsPaths(Globals.prefs.getFileDirectoryPreferences());
tm.addEntry(0, new FileListEntry(toLink.getFileName().toString(), FileUtil.shortenFileName(toLink, dirsS).toString(), ExternalFileTypes.getInstance().getExternalFileTypeByName("PDF")));
entry.setField(FieldName.FILE, tm.getStringRepresentation());
res.add(entry);
}
Also used :
Path(java.nio.file.Path)
BibEntry(org.jabref.model.entry.BibEntry)
ParserResult(org.jabref.logic.importer.ParserResult)
FileListTableModel(org.jabref.gui.filelist.FileListTableModel)
ArrayList(java.util.ArrayList)
FileListEntry(org.jabref.gui.filelist.FileListEntry)
PdfXmpImporter(org.jabref.logic.importer.fileformat.PdfXmpImporter)
Aggregations
FileListEntry (org.jabref.gui.filelist.FileListEntry)14
FileListTableModel (org.jabref.gui.filelist.FileListTableModel)9
ExternalFileType (org.jabref.gui.externalfiletype.ExternalFileType)7
Path (java.nio.file.Path)6
BibEntry (org.jabref.model.entry.BibEntry)5
UndoableFieldChange (org.jabref.gui.undo.UndoableFieldChange)4
IOException (java.io.IOException)3
ArrayList (java.util.ArrayList)3
List (java.util.List)3
Optional (java.util.Optional)3
JLabel (javax.swing.JLabel)3
ExternalFileMenuItem (org.jabref.gui.externalfiletype.ExternalFileMenuItem)3
UnknownExternalFileType (org.jabref.gui.externalfiletype.UnknownExternalFileType)3
FileListEntryEditor (org.jabref.gui.filelist.FileListEntryEditor)3
LinkedFile (org.jabref.model.entry.LinkedFile)3
File (java.io.File)2
Icon (javax.swing.Icon)2
JPopupMenu (javax.swing.JPopupMenu)2
CopyDoiUrlAction (org.jabref.gui.actions.CopyDoiUrlAction)2
ExternalFileTypeEntryEditor (org.jabref.gui.externalfiletype.ExternalFileTypeEntryEditor)2
