Examples with BibEntry org.jabref.model.entry.BibEntry used on opensource projects

Example 1 with BibEntry

use of org.jabref.model.entry.BibEntry in project jabref by JabRef.

the class BasePanel method setupActions.

private void setupActions() {
    SaveDatabaseAction saveAction = new SaveDatabaseAction(this);
    CleanupAction cleanUpAction = new CleanupAction(this, Globals.prefs);
    actions.put(Actions.UNDO, undoAction);
    actions.put(Actions.REDO, redoAction);
    actions.put(Actions.FOCUS_TABLE, (BaseAction) () -> {
        mainTable.requestFocus();
    });
    // The action for opening an entry editor.
    actions.put(Actions.EDIT, (BaseAction) selectionListener::editSignalled);
    // The action for saving a database.
    actions.put(Actions.SAVE, saveAction);
    actions.put(Actions.SAVE_AS, (BaseAction) saveAction::saveAs);
    actions.put(Actions.SAVE_SELECTED_AS, new SaveSelectedAction(SavePreferences.DatabaseSaveType.ALL));
    actions.put(Actions.SAVE_SELECTED_AS_PLAIN, new SaveSelectedAction(SavePreferences.DatabaseSaveType.PLAIN_BIBTEX));
    // The action for copying selected entries.
    actions.put(Actions.COPY, (BaseAction) () -> copy());
    actions.put(Actions.PRINT_PREVIEW, new PrintPreviewAction());
    actions.put(Actions.CUT, (BaseAction) this::cut);
    //when you modify this action be sure to adjust Actions.CUT,
    //they are the same except of the Localization, delete confirmation and Actions.COPY call
    actions.put(Actions.DELETE, (BaseAction) () -> delete(false));
    // The action for pasting entries or cell contents.
    //  - more robust detection of available content flavors (doesn't only look at first one offered)
    //  - support for parsing string-flavor clipboard contents which are bibtex entries.
    //    This allows you to (a) paste entire bibtex entries from a text editor, web browser, etc
    //                       (b) copy and paste entries between multiple instances of JabRef (since
    //         only the text representation seems to get as far as the X clipboard, at least on my system)
    actions.put(Actions.PASTE, (BaseAction) () -> paste());
    actions.put(Actions.SELECT_ALL, (BaseAction) mainTable::selectAll);
    // The action for opening the preamble editor
    actions.put(Actions.EDIT_PREAMBLE, (BaseAction) () -> {
        if (preambleEditor == null) {
            PreambleEditor form = new PreambleEditor(frame, BasePanel.this, bibDatabaseContext.getDatabase());
            form.setLocationRelativeTo(frame);
            form.setVisible(true);
            preambleEditor = form;
        } else {
            preambleEditor.setVisible(true);
        }
    });
    // The action for opening the string editor
    actions.put(Actions.EDIT_STRINGS, (BaseAction) () -> {
        if (stringDialog == null) {
            StringDialog form = new StringDialog(frame, BasePanel.this, bibDatabaseContext.getDatabase());
            form.setVisible(true);
            stringDialog = form;
        } else {
            stringDialog.setVisible(true);
        }
    });
    actions.put(FindUnlinkedFilesDialog.ACTION_COMMAND, (BaseAction) () -> {
        final FindUnlinkedFilesDialog dialog = new FindUnlinkedFilesDialog(frame, frame, BasePanel.this);
        dialog.setLocationRelativeTo(frame);
        dialog.setVisible(true);
    });
    // The action for auto-generating keys.
    actions.put(Actions.MAKE_KEY, new AbstractWorker() {

        List<BibEntry> entries;

        int numSelected;

        boolean canceled;

        // Run first, in EDT:
        @Override
        public void init() {
            entries = getSelectedEntries();
            numSelected = entries.size();
            if (entries.isEmpty()) {
                // None selected. Inform the user to select entries first.
                JOptionPane.showMessageDialog(frame, Localization.lang("First select the entries you want keys to be generated for."), Localization.lang("Autogenerate BibTeX keys"), JOptionPane.INFORMATION_MESSAGE);
                return;
            }
            frame.block();
            output(formatOutputMessage(Localization.lang("Generating BibTeX key for"), numSelected));
        }

        // Run second, on a different thread:
        @Override
        public void run() {
            // We don't want to generate keys for entries which already have one thus remove the entries
            if (Globals.prefs.getBoolean(JabRefPreferences.AVOID_OVERWRITING_KEY)) {
                entries.removeIf(BibEntry::hasCiteKey);
            // if we're going to override some cite keys warn the user about it
            } else if (Globals.prefs.getBoolean(JabRefPreferences.WARN_BEFORE_OVERWRITING_KEY)) {
                if (entries.parallelStream().anyMatch(BibEntry::hasCiteKey)) {
                    CheckBoxMessage cbm = new CheckBoxMessage(Localization.lang("One or more keys will be overwritten. Continue?"), Localization.lang("Disable this confirmation dialog"), false);
                    final int answer = JOptionPane.showConfirmDialog(frame, cbm, Localization.lang("Overwrite keys"), JOptionPane.YES_NO_OPTION);
                    Globals.prefs.putBoolean(JabRefPreferences.WARN_BEFORE_OVERWRITING_KEY, !cbm.isSelected());
                    // The user doesn't want to overide cite keys
                    if (answer == JOptionPane.NO_OPTION) {
                        canceled = true;
                        return;
                    }
                }
            }
            // generate the new cite keys for each entry
            final NamedCompound ce = new NamedCompound(Localization.lang("Autogenerate BibTeX keys"));
            AbstractBibtexKeyPattern citeKeyPattern = bibDatabaseContext.getMetaData().getCiteKeyPattern(Globals.prefs.getBibtexKeyPatternPreferences().getKeyPattern());
            for (BibEntry entry : entries) {
                String oldCiteKey = entry.getCiteKeyOptional().orElse("");
                BibtexKeyPatternUtil.makeAndSetLabel(citeKeyPattern, bibDatabaseContext.getDatabase(), entry, Globals.prefs.getBibtexKeyPatternPreferences());
                String newCiteKey = entry.getCiteKeyOptional().orElse("");
                if (!oldCiteKey.equals(newCiteKey)) {
                    ce.addEdit(new UndoableKeyChange(entry, oldCiteKey, newCiteKey));
                }
            }
            ce.end();
            // register the undo event only if new cite keys were generated
            if (ce.hasEdits()) {
                getUndoManager().addEdit(ce);
            }
        }

        // Run third, on EDT:
        @Override
        public void update() {
            if (canceled) {
                frame.unblock();
                return;
            }
            markBaseChanged();
            numSelected = entries.size();
            ////////////////////////////////////////////////////////////////////////////////
            for (final BibEntry bibEntry : entries) {
                SwingUtilities.invokeLater(() -> {
                    final int row = mainTable.findEntry(bibEntry);
                    if ((row >= 0) && (mainTable.getSelectedRowCount() < entries.size())) {
                        mainTable.addRowSelectionInterval(row, row);
                    }
                });
            }
            ////////////////////////////////////////////////////////////////////////////////
            output(formatOutputMessage(Localization.lang("Generated BibTeX key for"), numSelected));
            frame.unblock();
        }
    });
    // The action for cleaning up entry.
    actions.put(Actions.CLEANUP, cleanUpAction);
    actions.put(Actions.MERGE_ENTRIES, (BaseAction) () -> new MergeEntriesDialog(BasePanel.this));
    actions.put(Actions.SEARCH, (BaseAction) frame.getGlobalSearchBar()::focus);
    actions.put(Actions.GLOBAL_SEARCH, (BaseAction) frame.getGlobalSearchBar()::performGlobalSearch);
    // The action for copying the selected entry's key.
    actions.put(Actions.COPY_KEY, (BaseAction) () -> copyKey());
    // The action for copying the selected entry's title.
    actions.put(Actions.COPY_TITLE, (BaseAction) () -> copyTitle());
    // The action for copying a cite for the selected entry.
    actions.put(Actions.COPY_CITE_KEY, (BaseAction) () -> copyCiteKey());
    // The action for copying the BibTeX key and the title for the first selected entry
    actions.put(Actions.COPY_KEY_AND_TITLE, (BaseAction) () -> copyKeyAndTitle());
    actions.put(Actions.COPY_CITATION_ASCII_DOC, (BaseAction) () -> copyCitationToClipboard(CitationStyleOutputFormat.ASCII_DOC));
    actions.put(Actions.COPY_CITATION_XSLFO, (BaseAction) () -> copyCitationToClipboard(CitationStyleOutputFormat.XSL_FO));
    actions.put(Actions.COPY_CITATION_HTML, (BaseAction) () -> copyCitationToClipboard(CitationStyleOutputFormat.HTML));
    actions.put(Actions.COPY_CITATION_RTF, (BaseAction) () -> copyCitationToClipboard(CitationStyleOutputFormat.RTF));
    actions.put(Actions.COPY_CITATION_TEXT, (BaseAction) () -> copyCitationToClipboard(CitationStyleOutputFormat.TEXT));
    // The action for copying the BibTeX keys as hyperlinks to the urls of the selected entries
    actions.put(Actions.COPY_KEY_AND_LINK, new CopyBibTeXKeyAndLinkAction(mainTable));
    actions.put(Actions.MERGE_DATABASE, new AppendDatabaseAction(frame, this));
    actions.put(Actions.ADD_FILE_LINK, new AttachFileAction(this));
    actions.put(Actions.OPEN_EXTERNAL_FILE, (BaseAction) () -> openExternalFile());
    actions.put(Actions.OPEN_FOLDER, (BaseAction) () -> JabRefExecutorService.INSTANCE.execute(() -> {
        final List<Path> files = FileUtil.getListOfLinkedFiles(mainTable.getSelectedEntries(), bibDatabaseContext.getFileDirectoriesAsPaths(Globals.prefs.getFileDirectoryPreferences()));
        for (final Path f : files) {
            try {
                JabRefDesktop.openFolderAndSelectFile(f.toAbsolutePath());
            } catch (IOException e) {
                LOGGER.info("Could not open folder", e);
            }
        }
    }));
    actions.put(Actions.OPEN_CONSOLE, (BaseAction) () -> JabRefDesktop.openConsole(frame.getCurrentBasePanel().getBibDatabaseContext().getDatabaseFile().orElse(null)));
    actions.put(Actions.PULL_CHANGES_FROM_SHARED_DATABASE, (BaseAction) () -> {
        DBMSSynchronizer dbmsSynchronizer = frame.getCurrentBasePanel().getBibDatabaseContext().getDBMSSynchronizer();
        dbmsSynchronizer.pullChanges();
    });
    actions.put(Actions.OPEN_URL, new OpenURLAction());
    actions.put(Actions.MERGE_WITH_FETCHED_ENTRY, new MergeWithFetchedEntryAction(this));
    actions.put(Actions.REPLACE_ALL, (BaseAction) () -> {
        final ReplaceStringDialog rsd = new ReplaceStringDialog(frame);
        rsd.setVisible(true);
        if (!rsd.okPressed()) {
            return;
        }
        int counter = 0;
        final NamedCompound ce = new NamedCompound(Localization.lang("Replace string"));
        if (rsd.selOnly()) {
            for (BibEntry be : mainTable.getSelectedEntries()) {
                counter += rsd.replace(be, ce);
            }
        } else {
            for (BibEntry entry : bibDatabaseContext.getDatabase().getEntries()) {
                counter += rsd.replace(entry, ce);
            }
        }
        output(Localization.lang("Replaced") + ' ' + counter + ' ' + (counter == 1 ? Localization.lang("occurrence") : Localization.lang("occurrences")) + '.');
        if (counter > 0) {
            ce.end();
            getUndoManager().addEdit(ce);
            markBaseChanged();
        }
    });
    actions.put(Actions.DUPLI_CHECK, (BaseAction) () -> JabRefExecutorService.INSTANCE.execute(new DuplicateSearch(BasePanel.this)));
    actions.put(Actions.PLAIN_TEXT_IMPORT, (BaseAction) () -> {
        EntryTypeDialog etd = new EntryTypeDialog(frame);
        etd.setLocationRelativeTo(BasePanel.this);
        etd.setVisible(true);
        EntryType tp = etd.getChoice();
        if (tp == null) {
            return;
        }
        BibEntry bibEntry = new BibEntry(tp.getName());
        TextInputDialog tidialog = new TextInputDialog(frame, bibEntry);
        tidialog.setLocationRelativeTo(BasePanel.this);
        tidialog.setVisible(true);
        if (tidialog.okPressed()) {
            UpdateField.setAutomaticFields(Collections.singletonList(bibEntry), false, false, Globals.prefs.getUpdateFieldPreferences());
            insertEntry(bibEntry);
        }
    });
    actions.put(Actions.MARK_ENTRIES, new MarkEntriesAction(frame, 0));
    actions.put(Actions.UNMARK_ENTRIES, (BaseAction) () -> {
        try {
            List<BibEntry> bes = mainTable.getSelectedEntries();
            if (bes.isEmpty()) {
                output(Localization.lang("This operation requires one or more entries to be selected."));
                return;
            }
            NamedCompound ce = new NamedCompound(Localization.lang("Unmark entries"));
            for (BibEntry be : bes) {
                EntryMarker.unmarkEntry(be, false, bibDatabaseContext.getDatabase(), ce);
            }
            ce.end();
            getUndoManager().addEdit(ce);
            markBaseChanged();
            String outputStr;
            if (bes.size() == 1) {
                outputStr = Localization.lang("Unmarked selected entry");
            } else {
                outputStr = Localization.lang("Unmarked all %0 selected entries", Integer.toString(bes.size()));
            }
            output(outputStr);
        } catch (Throwable ex) {
            LOGGER.warn("Could not unmark", ex);
        }
    });
    actions.put(Actions.UNMARK_ALL, (BaseAction) () -> {
        NamedCompound ce = new NamedCompound(Localization.lang("Unmark all"));
        for (BibEntry be : bibDatabaseContext.getDatabase().getEntries()) {
            EntryMarker.unmarkEntry(be, false, bibDatabaseContext.getDatabase(), ce);
        }
        ce.end();
        getUndoManager().addEdit(ce);
        markBaseChanged();
        output(Localization.lang("Unmarked all entries"));
    });
    // Note that we can't put the number of entries that have been reverted into the undoText as the concrete number cannot be injected
    actions.put(new SpecialFieldValueViewModel(SpecialField.RELEVANCE.getValues().get(0)).getActionName(), new SpecialFieldViewModel(SpecialField.RELEVANCE).getSpecialFieldAction(SpecialField.RELEVANCE.getValues().get(0), frame));
    actions.put(new SpecialFieldValueViewModel(SpecialField.QUALITY.getValues().get(0)).getActionName(), new SpecialFieldViewModel(SpecialField.QUALITY).getSpecialFieldAction(SpecialField.QUALITY.getValues().get(0), frame));
    actions.put(new SpecialFieldValueViewModel(SpecialField.PRINTED.getValues().get(0)).getActionName(), new SpecialFieldViewModel(SpecialField.PRINTED).getSpecialFieldAction(SpecialField.PRINTED.getValues().get(0), frame));
    for (SpecialFieldValue prio : SpecialField.PRIORITY.getValues()) {
        actions.put(new SpecialFieldValueViewModel(prio).getActionName(), new SpecialFieldViewModel(SpecialField.PRIORITY).getSpecialFieldAction(prio, this.frame));
    }
    for (SpecialFieldValue rank : SpecialField.RANKING.getValues()) {
        actions.put(new SpecialFieldValueViewModel(rank).getActionName(), new SpecialFieldViewModel(SpecialField.RANKING).getSpecialFieldAction(rank, this.frame));
    }
    for (SpecialFieldValue status : SpecialField.READ_STATUS.getValues()) {
        actions.put(new SpecialFieldValueViewModel(status).getActionName(), new SpecialFieldViewModel(SpecialField.READ_STATUS).getSpecialFieldAction(status, this.frame));
    }
    actions.put(Actions.TOGGLE_PREVIEW, (BaseAction) () -> {
        PreviewPreferences previewPreferences = Globals.prefs.getPreviewPreferences();
        boolean enabled = !previewPreferences.isPreviewPanelEnabled();
        PreviewPreferences newPreviewPreferences = previewPreferences.getBuilder().withPreviewPanelEnabled(enabled).build();
        Globals.prefs.storePreviewPreferences(newPreviewPreferences);
        setPreviewActiveBasePanels(enabled);
        frame.setPreviewToggle(enabled);
    });
    actions.put(Actions.NEXT_PREVIEW_STYLE, (BaseAction) selectionListener::nextPreviewStyle);
    actions.put(Actions.PREVIOUS_PREVIEW_STYLE, (BaseAction) selectionListener::previousPreviewStyle);
    actions.put(Actions.MANAGE_SELECTORS, (BaseAction) () -> {
        ContentSelectorDialog csd = new ContentSelectorDialog(frame, frame, BasePanel.this, false, null);
        csd.setLocationRelativeTo(frame);
        csd.setVisible(true);
    });
    actions.put(Actions.EXPORT_TO_CLIPBOARD, new ExportToClipboardAction(frame));
    actions.put(Actions.SEND_AS_EMAIL, new SendAsEMailAction(frame));
    actions.put(Actions.WRITE_XMP, new WriteXMPAction(this));
    actions.put(Actions.ABBREVIATE_ISO, new AbbreviateAction(this, true));
    actions.put(Actions.ABBREVIATE_MEDLINE, new AbbreviateAction(this, false));
    actions.put(Actions.UNABBREVIATE, new UnabbreviateAction(this));
    actions.put(Actions.AUTO_SET_FILE, new SynchronizeFileField(this));
    actions.put(Actions.BACK, (BaseAction) BasePanel.this::back);
    actions.put(Actions.FORWARD, (BaseAction) BasePanel.this::forward);
    actions.put(Actions.RESOLVE_DUPLICATE_KEYS, new SearchFixDuplicateLabels(this));
    actions.put(Actions.ADD_TO_GROUP, new GroupAddRemoveDialog(this, true, false));
    actions.put(Actions.REMOVE_FROM_GROUP, new GroupAddRemoveDialog(this, false, false));
    actions.put(Actions.MOVE_TO_GROUP, new GroupAddRemoveDialog(this, true, true));
    actions.put(Actions.DOWNLOAD_FULL_TEXT, new FindFullTextAction(this));
}

Example 2 with BibEntry

use of org.jabref.model.entry.BibEntry in project jabref by JabRef.

the class BasePanel method paste.

private void paste() {
    Collection<BibEntry> bes = new ClipBoardManager().extractBibEntriesFromClipboard();
    // or were parsed from a string
    if (!bes.isEmpty()) {
        NamedCompound ce = new NamedCompound((bes.size() > 1 ? Localization.lang("paste entries") : Localization.lang("paste entry")));
        // Store the first inserted bibtexentry.
        // bes[0] does not work as bes[0] is first clonded,
        // then inserted.
        // This entry is used to open up an entry editor
        // for the first inserted entry.
        BibEntry firstBE = null;
        for (BibEntry be1 : bes) {
            BibEntry be = (BibEntry) be1.clone();
            if (firstBE == null) {
                firstBE = be;
            }
            UpdateField.setAutomaticFields(be, Globals.prefs.getUpdateFieldPreferences());
            // We have to clone the
            // entries, since the pasted
            // entries must exist
            // independently of the copied
            // ones.
            bibDatabaseContext.getDatabase().insertEntry(be);
            ce.addEdit(new UndoableInsertEntry(bibDatabaseContext.getDatabase(), be, BasePanel.this));
        }
        ce.end();
        getUndoManager().addEdit(ce);
        output(formatOutputMessage(Localization.lang("Pasted"), bes.size()));
        markBaseChanged();
        highlightEntry(firstBE);
        mainTable.requestFocus();
        if (Globals.prefs.getBoolean(JabRefPreferences.AUTO_OPEN_FORM)) {
            selectionListener.editSignalled(firstBE);
        }
    }
}

Example 3 with BibEntry

use of org.jabref.model.entry.BibEntry in project jabref by JabRef.

the class BasePanel method copyCiteKey.

private void copyCiteKey() {
    List<BibEntry> bes = mainTable.getSelectedEntries();
    if (!bes.isEmpty()) {
        storeCurrentEdit();
        List<String> keys = new ArrayList<>(bes.size());
        // Collect all non-null keys.
        for (BibEntry be : bes) {
            be.getCiteKeyOptional().ifPresent(keys::add);
        }
        if (keys.isEmpty()) {
            output(Localization.lang("None of the selected entries have BibTeX keys."));
            return;
        }
        String sb = String.join(",", keys);
        StringSelection ss = new StringSelection("\\cite{" + sb + '}');
        Toolkit.getDefaultToolkit().getSystemClipboard().setContents(ss, BasePanel.this);
        if (keys.size() == bes.size()) {
            // All entries had keys.
            output(bes.size() > 1 ? Localization.lang("Copied keys") : Localization.lang("Copied key") + '.');
        } else {
            output(Localization.lang("Warning: %0 out of %1 entries have undefined BibTeX key.", Integer.toString(bes.size() - keys.size()), Integer.toString(bes.size())));
        }
    }
}

Example 4 with BibEntry

use of org.jabref.model.entry.BibEntry in project jabref by JabRef.

the class BasePanel method forward.

private void forward() {
    if (!nextEntries.isEmpty()) {
        BibEntry toShow = nextEntries.get(nextEntries.size() - 1);
        nextEntries.remove(nextEntries.size() - 1);
        // Add the entry we are going forward from to the Back history:
        if (showing != null) {
            previousEntries.add(showing);
        }
        // to avoid the history getting updated erroneously
        backOrForwardInProgress = true;
        highlightEntry(toShow);
    }
}

Example 5 with BibEntry

use of org.jabref.model.entry.BibEntry in project jabref by JabRef.

the class ClipBoardManager method extractBibEntriesFromClipboard.

public List<BibEntry> extractBibEntriesFromClipboard() {
    // Get clipboard contents, and see if TransferableBibtexEntry is among the content flavors offered
    Transferable content = CLIPBOARD.getContents(null);
    List<BibEntry> result = new ArrayList<>();
    if (content.isDataFlavorSupported(TransferableBibtexEntry.entryFlavor)) {
        // We have determined that the clipboard data is a set of entries.
        try {
            @SuppressWarnings("unchecked") List<BibEntry> contents = (List<BibEntry>) content.getTransferData(TransferableBibtexEntry.entryFlavor);
            result = contents;
        } catch (UnsupportedFlavorException | ClassCastException ex) {
            LOGGER.warn("Could not paste this type", ex);
        } catch (IOException ex) {
            LOGGER.warn("Could not paste", ex);
        }
    } else if (content.isDataFlavorSupported(DataFlavor.stringFlavor)) {
        try {
            String data = (String) content.getTransferData(DataFlavor.stringFlavor);
            // fetch from doi
            if (DOI.parse(data).isPresent()) {
                LOGGER.info("Found DOI in clipboard");
                Optional<BibEntry> entry = new DoiFetcher(Globals.prefs.getImportFormatPreferences()).performSearchById(new DOI(data).getDOI());
                entry.ifPresent(result::add);
            } else {
                // parse bibtex string
                BibtexParser bp = new BibtexParser(Globals.prefs.getImportFormatPreferences());
                BibDatabase db = bp.parse(new StringReader(data)).getDatabase();
                LOGGER.info("Parsed " + db.getEntryCount() + " entries from clipboard text");
                if (db.hasEntries()) {
                    result = db.getEntries();
                }
            }
        } catch (UnsupportedFlavorException ex) {
            LOGGER.warn("Could not parse this type", ex);
        } catch (IOException ex) {
            LOGGER.warn("Data is no longer available in the requested flavor", ex);
        } catch (FetcherException ex) {
            LOGGER.error("Error while fetching", ex);
        }
    }
    return result;
}