Examples with BibDatabase org.jabref.model.database.BibDatabase used on opensource projects

Example 6 with BibDatabase

use of org.jabref.model.database.BibDatabase in project jabref by JabRef.

the class OpenOfficePanel method exportEntries.

private void exportEntries() {
    try {
        if (style == null) {
            style = loader.getUsedStyle();
        } else {
            style.ensureUpToDate();
        }
        ooBase.updateSortedReferenceMarks();
        List<BibDatabase> databases = getBaseList();
        List<String> unresolvedKeys = ooBase.refreshCiteMarkers(databases, style);
        BibDatabase newDatabase = ooBase.generateDatabase(databases);
        if (!unresolvedKeys.isEmpty()) {
            JOptionPane.showMessageDialog(frame, Localization.lang("Your OpenOffice/LibreOffice document references the BibTeX key '%0', which could not be found in your current library.", unresolvedKeys.get(0)), Localization.lang("Unable to generate new library"), JOptionPane.ERROR_MESSAGE);
        }
        Defaults defaults = new Defaults(Globals.prefs.getDefaultBibDatabaseMode());
        BibDatabaseContext databaseContext = new BibDatabaseContext(newDatabase, defaults);
        this.frame.addTab(databaseContext, true);
    } catch (BibEntryNotFoundException ex) {
        JOptionPane.showMessageDialog(frame, Localization.lang("Your OpenOffice/LibreOffice document references the BibTeX key '%0', which could not be found in your current library.", ex.getBibtexKey()), Localization.lang("Unable to synchronize bibliography"), JOptionPane.ERROR_MESSAGE);
        LOGGER.debug("BibEntry not found", ex);
    } catch (com.sun.star.lang.IllegalArgumentException | UnknownPropertyException | PropertyVetoException | UndefinedCharacterFormatException | NoSuchElementException | WrappedTargetException | IOException | CreationException e) {
        LOGGER.warn("Problem generating new database.", e);
    }
}

Example 7 with BibDatabase

use of org.jabref.model.database.BibDatabase in project jabref by JabRef.

the class OOBibBase method insertEntry.

/**
     * This method inserts a cite marker in the text for the given BibEntry,
     * and may refresh the bibliography.
     * @param entries The entries to cite.
     * @param database The database the entry belongs to.
     * @param style The bibliography style we are using.
     * @param inParenthesis Indicates whether it is an in-text citation or a citation in parenthesis.
     *   This is not relevant if numbered citations are used.
     * @param withText Indicates whether this should be a normal citation (true) or an empty
     *   (invisible) citation (false).
     * @param sync Indicates whether the reference list should be refreshed.
     * @throws IllegalTypeException
     * @throws PropertyExistException
     * @throws NotRemoveableException
     * @throws UnknownPropertyException
     * @throws UndefinedCharacterFormatException
     * @throws NoSuchElementException
     * @throws WrappedTargetException
     * @throws IOException
     * @throws PropertyVetoException
     * @throws CreationException
     * @throws BibEntryNotFoundException
     * @throws UndefinedParagraphFormatException
     */
public void insertEntry(List<BibEntry> entries, BibDatabase database, List<BibDatabase> allBases, OOBibStyle style, boolean inParenthesis, boolean withText, String pageInfo, boolean sync) throws IllegalArgumentException, UnknownPropertyException, NotRemoveableException, PropertyExistException, IllegalTypeException, UndefinedCharacterFormatException, WrappedTargetException, NoSuchElementException, PropertyVetoException, IOException, CreationException, BibEntryNotFoundException, UndefinedParagraphFormatException {
    try {
        XTextViewCursor xViewCursor = xViewCursorSupplier.getViewCursor();
        if (entries.size() > 1) {
            if (style.getBooleanCitProperty(OOBibStyle.MULTI_CITE_CHRONOLOGICAL)) {
                entries.sort(yearAuthorTitleComparator);
            } else {
                entries.sort(entryComparator);
            }
        }
        String keyString = String.join(",", entries.stream().map(entry -> entry.getCiteKeyOptional().orElse("")).collect(Collectors.toList()));
        // Insert bookmark:
        String bName = getUniqueReferenceMarkName(keyString, withText ? inParenthesis ? OOBibBase.AUTHORYEAR_PAR : OOBibBase.AUTHORYEAR_INTEXT : OOBibBase.INVISIBLE_CIT);
        // If we should store metadata for page info, do that now:
        if (pageInfo != null) {
            LOGGER.info("Storing page info: " + pageInfo);
            setCustomProperty(bName, pageInfo);
        }
        xViewCursor.getText().insertString(xViewCursor, " ", false);
        if (style.isFormatCitations()) {
            XPropertySet xCursorProps = UnoRuntime.queryInterface(XPropertySet.class, xViewCursor);
            String charStyle = style.getCitationCharacterFormat();
            try {
                xCursorProps.setPropertyValue(CHAR_STYLE_NAME, charStyle);
            } catch (UnknownPropertyException | PropertyVetoException | IllegalArgumentException | WrappedTargetException ex) {
                // Setting the character format failed, so we throw an exception that
                // will result in an error message for the user. Before that,
                // delete the space we inserted:
                xViewCursor.goLeft((short) 1, true);
                xViewCursor.setString("");
                throw new UndefinedCharacterFormatException(charStyle);
            }
        }
        xViewCursor.goLeft((short) 1, false);
        Map<BibEntry, BibDatabase> databaseMap = new HashMap<>();
        for (BibEntry entry : entries) {
            databaseMap.put(entry, database);
        }
        String citeText = style.isNumberEntries() ? "-" : style.getCitationMarker(entries, databaseMap, inParenthesis, null, null);
        insertReferenceMark(bName, citeText, xViewCursor, withText, style);
        xViewCursor.collapseToEnd();
        xViewCursor.goRight((short) 1, false);
        XTextRange position = xViewCursor.getEnd();
        if (sync) {
            // To account for numbering and for uniqiefiers, we must refresh the cite markers:
            updateSortedReferenceMarks();
            refreshCiteMarkers(allBases, style);
            // Insert it at the current position:
            rebuildBibTextSection(allBases, style);
        }
        // Go back to the relevant position:
        xViewCursor.gotoRange(position, false);
    } catch (DisposedException ex) {
        // or catch a DisposedException (which is in a OO JAR file).
        throw new ConnectionLostException(ex.getMessage());
    }
}

Example 8 with BibDatabase

use of org.jabref.model.database.BibDatabase in project jabref by JabRef.

the class OOBibBase method insertFullReferenceAtCursor.

private void insertFullReferenceAtCursor(XTextCursor cursor, Map<BibEntry, BibDatabase> entries, OOBibStyle style, String parFormat) throws UndefinedParagraphFormatException, IllegalArgumentException, UnknownPropertyException, PropertyVetoException, WrappedTargetException {
    Map<BibEntry, BibDatabase> correctEntries;
    // If we don't have numbered entries, we need to sort the entries before adding them:
    if (style.isSortByPosition()) {
        // Use the received map directly
        correctEntries = entries;
    } else {
        // Sort map
        Map<BibEntry, BibDatabase> newMap = new TreeMap<>(entryComparator);
        newMap.putAll(entries);
        correctEntries = newMap;
    }
    int number = 1;
    for (Map.Entry<BibEntry, BibDatabase> entry : correctEntries.entrySet()) {
        if (entry.getKey() instanceof UndefinedBibtexEntry) {
            continue;
        }
        OOUtil.insertParagraphBreak(text, cursor);
        if (style.isNumberEntries()) {
            int minGroupingCount = style.getIntCitProperty(OOBibStyle.MINIMUM_GROUPING_COUNT);
            OOUtil.insertTextAtCurrentLocation(text, cursor, style.getNumCitationMarker(Collections.singletonList(number++), minGroupingCount, true), Collections.emptyList());
        }
        Layout layout = style.getReferenceFormat(entry.getKey().getType());
        layout.setPostFormatter(POSTFORMATTER);
        OOUtil.insertFullReferenceAtCurrentLocation(text, cursor, layout, parFormat, entry.getKey(), entry.getValue(), uniquefiers.get(entry.getKey().getCiteKeyOptional().orElse(null)));
    }
}

Example 9 with BibDatabase

use of org.jabref.model.database.BibDatabase in project jabref by JabRef.

the class OOBibBase method generateDatabase.

public BibDatabase generateDatabase(List<BibDatabase> databases) throws NoSuchElementException, WrappedTargetException {
    BibDatabase resultDatabase = new BibDatabase();
    List<String> cited = findCitedKeys();
    // For each cited key
    for (String key : cited) {
        // Loop through the available databases
        for (BibDatabase loopDatabase : databases) {
            Optional<BibEntry> entry = loopDatabase.getEntryByKey(key);
            // If entry found
            if (entry.isPresent()) {
                BibEntry clonedEntry = (BibEntry) entry.get().clone();
                // Insert a copy of the entry
                resultDatabase.insertEntry(clonedEntry);
                // Check if the cloned entry has a crossref field
                clonedEntry.getField(FieldName.CROSSREF).ifPresent(crossref -> {
                    if (!resultDatabase.getEntryByKey(crossref).isPresent()) {
                        loopDatabase.getEntryByKey(crossref).ifPresent(resultDatabase::insertEntry);
                    }
                });
                // Be happy with the first found BibEntry and move on to next key
                break;
            }
        }
    }
    return resultDatabase;
}

Example 10 with BibDatabase

use of org.jabref.model.database.BibDatabase in project jabref by JabRef.

the class OOBibBase method getSortedEntriesFromSortedRefMarks.

private Map<BibEntry, BibDatabase> getSortedEntriesFromSortedRefMarks(List<String> names, Map<String, BibDatabase> linkSourceBase) {
    Map<BibEntry, BibDatabase> newList = new LinkedHashMap<>();
    for (String name : names) {
        Matcher citeMatcher = CITE_PATTERN.matcher(name);
        if (citeMatcher.find()) {
            String[] keys = citeMatcher.group(2).split(",");
            for (String key : keys) {
                BibDatabase database = linkSourceBase.get(key);
                Optional<BibEntry> origEntry = Optional.empty();
                if (database != null) {
                    origEntry = database.getEntryByKey(key);
                }
                if (origEntry.isPresent()) {
                    if (!newList.containsKey(origEntry.get())) {
                        newList.put(origEntry.get(), database);
                    }
                } else {
                    LOGGER.info("BibTeX key not found: '" + key + "'");
                    LOGGER.info("Problem with reference mark: '" + name + "'");
                    newList.put(new UndefinedBibtexEntry(key), null);
                }
            }
        }
    }
    return newList;
}