Examples with Clinician org.mitre.synthea.world.agents.Clinician used on opensource projects

Example 6 with Clinician

use of org.mitre.synthea.world.agents.Clinician in project synthea by synthetichealth.

the class FhirPractitionerExporterR4 method export.

/**
 * Export the practitioner in FHIR R4 format.
 */
public static void export(RandomNumberGenerator rand, long stop) {
    if (Config.getAsBoolean("exporter.practitioner.fhir.export")) {
        Bundle bundle = new Bundle();
        if (Config.getAsBoolean("exporter.fhir.transaction_bundle")) {
            bundle.setType(BundleType.BATCH);
        } else {
            bundle.setType(BundleType.COLLECTION);
        }
        for (Provider h : Provider.getProviderList()) {
            // filter - exports only those hospitals in use
            Table<Integer, String, AtomicInteger> utilization = h.getUtilization();
            int totalEncounters = utilization.column(Provider.ENCOUNTERS).values().stream().mapToInt(ai -> ai.get()).sum();
            if (totalEncounters > 0) {
                Map<String, ArrayList<Clinician>> clinicians = h.clinicianMap;
                for (String specialty : clinicians.keySet()) {
                    ArrayList<Clinician> docs = clinicians.get(specialty);
                    for (Clinician doc : docs) {
                        if (doc.getEncounterCount() > 0) {
                            BundleEntryComponent entry = FhirR4.practitioner(rand, bundle, doc);
                            Practitioner practitioner = (Practitioner) entry.getResource();
                            practitioner.addExtension().setUrl(EXTENSION_URI).setValue(new IntegerType(doc.getEncounterCount()));
                        }
                    }
                }
            }
        }
        String bundleJson = FhirR4.getContext().newJsonParser().setPrettyPrint(true).encodeResourceToString(bundle);
        // get output folder
        List<String> folders = new ArrayList<>();
        folders.add("fhir");
        String baseDirectory = Config.get("exporter.baseDirectory");
        File f = Paths.get(baseDirectory, folders.toArray(new String[0])).toFile();
        f.mkdirs();
        Path outFilePath = f.toPath().resolve("practitionerInformation" + stop + ".json");
        try {
            Files.write(outFilePath, Collections.singleton(bundleJson), StandardOpenOption.CREATE_NEW);
        } catch (IOException e) {
            e.printStackTrace();
        }
    }
}