Examples with MolgenisDataException org.molgenis.data.MolgenisDataException used on opensource projects

Example 21 with MolgenisDataException

use of org.molgenis.data.MolgenisDataException in project molgenis by molgenis.

the class ScheduledJobRepositoryDecoratorTest method testDeleteFails.

@Test
public void testDeleteFails() {
    doThrow(new MolgenisDataException("Failed")).when(delegateRepository).delete(scheduledJob);
    when(scheduledJob.getId()).thenReturn("id");
    try {
        scheduledJobRepositoryDecorator.delete(scheduledJob);
        Assert.fail("delete method should rethrow exception from delegate repository");
    } catch (MolgenisDataException expected) {
    }
    verifyNoMoreInteractions(jobScheduler);
}

Example 22 with MolgenisDataException

use of org.molgenis.data.MolgenisDataException in project molgenis by molgenis.

the class JobTest method testTransactionalJobFailure.

@Test
public void testTransactionalJobFailure() throws Exception {
    when(transactionOperations.execute(actionCaptor.capture())).thenAnswer((call) -> actionCaptor.getValue().doInTransaction(transactionStatus));
    MolgenisDataException mde = new MolgenisDataException();
    when(callable.call()).thenThrow(mde);
    try {
        job.call();
        fail("TransactionalJob call should throw exception if subclass execution fails.");
    } catch (JobExecutionException ex) {
        assertSame(ex.getCause(), mde);
    }
    verify(transactionOperations).execute(any());
    verify(progress).start();
    verify(callable).call();
    verify(progress).failed(mde);
    verifyNoMoreInteractions(callable, progress, transactionOperations);
}

Example 23 with MolgenisDataException

use of org.molgenis.data.MolgenisDataException in project molgenis by molgenis.

the class EntityTypeMapper method toEntityType.

public EntityType toEntityType(EditorEntityType editorEntityType) {
    if (editorEntityType.getLabelAttribute() == null || editorEntityType.getIdAttribute() == null) {
        throw new MolgenisDataException("ID and Label attribute for EntityType [" + editorEntityType.getLabel() + "] can not be null");
    }
    EntityType entityType = entityTypeFactory.create();
    entityType.setId(editorEntityType.getId());
    entityType.setPackage(packageMapper.toPackageReference(editorEntityType.getPackage()));
    entityType.setLabel(editorEntityType.getLabel());
    if (editorEntityType.getLabelI18n() != null) {
        getLanguageCodes().forEach(languageCode -> entityType.setLabel(languageCode, editorEntityType.getLabelI18n().get(languageCode)));
    }
    entityType.setDescription(editorEntityType.getDescription());
    if (editorEntityType.getDescriptionI18n() != null) {
        getLanguageCodes().forEach(languageCode -> entityType.setDescription(languageCode, editorEntityType.getDescriptionI18n().get(languageCode)));
    }
    entityType.setOwnAllAttributes(attributeMapper.toAttributes(editorEntityType.getAttributes(), editorEntityType));
    entityType.setAbstract(editorEntityType.isAbstract());
    entityType.setExtends(entityTypeParentMapper.toEntityTypeReference(editorEntityType.getEntityTypeParent()));
    entityType.setTags(tagMapper.toTagReferences(editorEntityType.getTags()));
    entityType.setBackend(editorEntityType.getBackend());
    return entityType;
}

Example 24 with MolgenisDataException

use of org.molgenis.data.MolgenisDataException in project molgenis by molgenis.

the class PostgreSqlExceptionTranslator method doTranslate.

private MolgenisDataException doTranslate(SQLException sqlException) {
    if (sqlException instanceof BatchUpdateException) {
        sqlException = sqlException.getNextException();
    }
    if (!(sqlException instanceof PSQLException)) {
        throw new RuntimeException(format("Unexpected exception class [%s]", sqlException.getClass().getSimpleName()));
    }
    PSQLException pSqlException = (PSQLException) sqlException;
    MolgenisDataException molgenisDataException = doTranslate(pSqlException);
    if (molgenisDataException == null) {
        molgenisDataException = new MolgenisDataException(sqlException);
    }
    return molgenisDataException;
}

Example 25 with MolgenisDataException

use of org.molgenis.data.MolgenisDataException in project molgenis by molgenis.

the class PostgreSqlExceptionTranslator method doTranslate.

private MolgenisDataException doTranslate(DataAccessException dataAccessException) {
    Throwable cause = dataAccessException.getCause();
    if (!(cause instanceof PSQLException)) {
        throw new RuntimeException(format("Unexpected exception class [%s]", cause.getClass().getSimpleName()));
    }
    PSQLException pSqlException = (PSQLException) cause;
    MolgenisDataException molgenisDataException = doTranslate(pSqlException);
    if (molgenisDataException == null) {
        molgenisDataException = new MolgenisDataException(dataAccessException);
    }
    return molgenisDataException;
}