Examples with MyEntitiesValidationReport org.molgenis.data.importer.MyEntitiesValidationReport used on opensource projects

Example 1 with MyEntitiesValidationReport

use of org.molgenis.data.importer.MyEntitiesValidationReport in project molgenis by molgenis.

the class EmxMetaDataParser method validate.

@Override
public EntitiesValidationReport validate(RepositoryCollection source) {
    MyEntitiesValidationReport report = new MyEntitiesValidationReport();
    Map<String, EntityType> metaDataMap = getEntityTypeMap(dataService, source);
    return buildValidationReport(source, report, metaDataMap);
}

Example 2 with MyEntitiesValidationReport

use of org.molgenis.data.importer.MyEntitiesValidationReport in project molgenis by molgenis.

the class EmxMetaDataParser method buildValidationReport.

private EntitiesValidationReport buildValidationReport(RepositoryCollection source, MyEntitiesValidationReport report, Map<String, EntityType> metaDataMap) {
    metaDataMap.values().forEach(entityTypeValidator::validate);
    metaDataMap.values().stream().map(EntityType::getAllAttributes).forEach(attributes -> attributes.forEach(attr -> {
        attributeValidator.validate(attr, ValidationMode.ADD_SKIP_ENTITY_VALIDATION);
    }));
    // validate package/entity/attribute tags
    metaDataMap.values().stream().map(EntityType::getPackage).filter(Objects::nonNull).forEach(package_ -> package_.getTags().forEach(tagValidator::validate));
    metaDataMap.values().forEach(entityType -> entityType.getTags().forEach(tagValidator::validate));
    metaDataMap.values().stream().map(EntityType::getAllAttributes).forEach(attributes -> attributes.forEach(attr -> {
        attr.getTags().forEach(tagValidator::validate);
    }));
    report = generateEntityValidationReport(source, report, metaDataMap);
    // Add entities without data
    for (String entityTypeId : metaDataMap.keySet()) {
        if (!report.getSheetsImportable().containsKey(entityTypeId))
            report.addEntity(entityTypeId, true);
    }
    return report;
}