Examples with AttributeType org.molgenis.data.meta.AttributeType used on opensource projects

Example 16 with AttributeType

use of org.molgenis.data.meta.AttributeType in project molgenis by molgenis.

the class AlgorithmServiceImpl method convert.

@SuppressWarnings("unchecked")
private Object convert(Object value, Attribute attr) {
    Object convertedValue;
    AttributeType attrType = attr.getDataType();
    switch(attrType) {
        case BOOL:
            convertedValue = value != null ? toBoolean(value) : null;
            break;
        case CATEGORICAL:
        case XREF:
        case FILE:
            convertedValue = value != null ? entityManager.getReference(attr.getRefEntity(), convert(value, attr.getRefEntity().getIdAttribute())) : null;
            break;
        case CATEGORICAL_MREF:
        case MREF:
        case ONE_TO_MANY:
            Collection<Object> valueIds = (Collection<Object>) value;
            convertedValue = valueIds.stream().map(valueId -> entityManager.getReference(attr.getRefEntity(), convert(valueId, attr.getRefEntity().getIdAttribute()))).collect(toList());
            break;
        case DATE:
            convertedValue = convertToDate(value);
            break;
        case DATE_TIME:
            convertedValue = convertToDateTime(value);
            break;
        case DECIMAL:
            convertedValue = convertToDouble(value);
            break;
        case EMAIL:
        case ENUM:
        case HTML:
        case HYPERLINK:
        case SCRIPT:
        case STRING:
        case TEXT:
            convertedValue = value != null ? value.toString() : null;
            break;
        case INT:
            convertedValue = convertToInteger(value);
            break;
        case LONG:
            convertedValue = convertToLong(value);
            break;
        case COMPOUND:
            throw new RuntimeException(format("Illegal attribute type [%s]", attrType.toString()));
        default:
            throw new UnexpectedEnumException(attrType);
    }
    return convertedValue;
}

Example 17 with AttributeType

use of org.molgenis.data.meta.AttributeType in project molgenis by molgenis.

the class EntityAttributesValidator method validate.

public Set<ConstraintViolation> validate(Entity entity, EntityType meta) {
    Set<ConstraintViolation> violations = checkNullableExpressions(entity, meta);
    violations.addAll(checkValidationExpressions(entity, meta));
    for (Attribute attr : meta.getAtomicAttributes()) {
        ConstraintViolation violation = null;
        AttributeType attrType = attr.getDataType();
        switch(attrType) {
            case EMAIL:
                violation = checkEmail(entity, attr, meta);
                break;
            case BOOL:
                violation = checkBoolean(entity, attr, meta);
                break;
            case DATE:
                violation = checkDate(entity, attr, meta);
                break;
            case DATE_TIME:
                violation = checkDateTime(entity, attr, meta);
                break;
            case DECIMAL:
                violation = checkDecimal(entity, attr, meta);
                break;
            case HYPERLINK:
                violation = checkHyperlink(entity, attr, meta);
                break;
            case INT:
                violation = checkInt(entity, attr, meta);
                if ((violation == null) && (attr.getRange() != null)) {
                    violation = checkRange(entity, attr, meta);
                }
                break;
            case LONG:
                violation = checkLong(entity, attr, meta);
                if ((violation == null) && (attr.getRange() != null)) {
                    violation = checkRange(entity, attr, meta);
                }
                break;
            case ENUM:
                violation = checkEnum(entity, attr, meta);
                break;
            case HTML:
                violation = checkText(entity, attr, meta, HTML);
                break;
            case SCRIPT:
                violation = checkText(entity, attr, meta, SCRIPT);
                break;
            case TEXT:
                violation = checkText(entity, attr, meta, TEXT);
                break;
            case STRING:
                violation = checkText(entity, attr, meta, STRING);
                break;
            case CATEGORICAL:
            case FILE:
            case XREF:
                violation = checkXref(entity, attr, meta);
                break;
            case CATEGORICAL_MREF:
            case MREF:
            case ONE_TO_MANY:
                violation = checkMref(entity, attr, meta);
                break;
            case COMPOUND:
                // no op
                break;
            default:
                throw new UnexpectedEnumException(attrType);
        }
        if (violation != null) {
            violations.add(violation);
        }
    }
    return violations;
}

Example 18 with AttributeType

use of org.molgenis.data.meta.AttributeType in project molgenis by molgenis.

the class QueryValidator method toQueryRuleValue.

private Object toQueryRuleValue(Object queryRuleValue, Attribute attr) {
    Object value;
    AttributeType attrType = attr.getDataType();
    switch(attrType) {
        case BOOL:
            value = convertBool(attr, queryRuleValue);
            break;
        case EMAIL:
        case HTML:
        case HYPERLINK:
        case SCRIPT:
        case STRING:
        case TEXT:
            value = convertString(attr, queryRuleValue);
            break;
        case ENUM:
            value = convertEnum(attr, queryRuleValue);
            break;
        case CATEGORICAL:
        case XREF:
        case CATEGORICAL_MREF:
        case MREF:
        case ONE_TO_MANY:
            value = convertRef(attr, queryRuleValue);
            break;
        case DATE:
            value = convertDate(attr, queryRuleValue);
            break;
        case DATE_TIME:
            value = convertDateTime(attr, queryRuleValue);
            break;
        case DECIMAL:
            value = convertDecimal(attr, queryRuleValue);
            break;
        case FILE:
            value = convertFile(attr, queryRuleValue);
            break;
        case INT:
            value = convertInt(attr, queryRuleValue);
            break;
        case LONG:
            value = convertLong(attr, queryRuleValue);
            break;
        case COMPOUND:
            throw new MolgenisValidationException(new ConstraintViolation(format("Attribute [%s] type [%s] is not allowed", attr.getName(), attrType.toString())));
        default:
            throw new UnexpectedEnumException(attrType);
    }
    return value;
}

Example 19 with AttributeType

use of org.molgenis.data.meta.AttributeType in project molgenis by molgenis.

the class EntityUtils method isNullValue.

/**
 * Returns whether an entity attribute value is <tt>null</tt> or empty for attributes referencing multiple entities.
 */
public static boolean isNullValue(Entity entity, Attribute attribute) {
    boolean isNullValue;
    String attributeName = attribute.getName();
    AttributeType attributeType = attribute.getDataType();
    switch(attributeType) {
        case BOOL:
            isNullValue = entity.getBoolean(attributeName) == null;
            break;
        case CATEGORICAL:
        case FILE:
        case XREF:
            isNullValue = entity.getEntity(attributeName) == null;
            break;
        case CATEGORICAL_MREF:
        case MREF:
        case ONE_TO_MANY:
            Iterable<Entity> refEntities = entity.getEntities(attributeName);
            isNullValue = Iterables.isEmpty(refEntities);
            break;
        case COMPOUND:
            throw new RuntimeException(format("Invalid data type [%s]", attribute.getDataType()));
        case DATE:
            isNullValue = entity.getLocalDate(attributeName) == null;
            break;
        case DATE_TIME:
            isNullValue = entity.getInstant(attributeName) == null;
            break;
        case DECIMAL:
            isNullValue = entity.getDouble(attributeName) == null;
            break;
        case EMAIL:
        case ENUM:
        case HTML:
        case HYPERLINK:
        case SCRIPT:
        case STRING:
        case TEXT:
            isNullValue = entity.getString(attributeName) == null;
            break;
        case INT:
            isNullValue = entity.getInt(attributeName) == null;
            break;
        case LONG:
            isNullValue = entity.getLong(attributeName) == null;
            break;
        default:
            throw new UnexpectedEnumException(attributeType);
    }
    return isNullValue;
}

Example 20 with AttributeType

use of org.molgenis.data.meta.AttributeType in project molgenis by molgenis.

the class JsMagmaScriptEvaluator method toScriptEngineValue.

private Object toScriptEngineValue(Entity entity, Attribute attr, int depth) {
    Object value = null;
    String attrName = attr.getName();
    AttributeType attrType = attr.getDataType();
    switch(attrType) {
        case BOOL:
            value = entity.getBoolean(attrName);
            break;
        case CATEGORICAL:
        case FILE:
        case XREF:
            Entity xrefEntity = entity.getEntity(attrName);
            value = toScriptEngineValueMap(xrefEntity, depth - 1);
            break;
        case CATEGORICAL_MREF:
        case MREF:
        case ONE_TO_MANY:
            ScriptObjectMirror jsArray = null;
            try {
                jsArray = (ScriptObjectMirror) jsScriptEngine.eval("var arr = []; arr");
                @SuppressWarnings("unchecked") List<Object> mrefValues = jsArray.to(List.class);
                entity.getEntities(attrName).forEach(mrefEntity -> mrefValues.add(toScriptEngineValueMap(mrefEntity, depth - 1)));
            } catch (javax.script.ScriptException ex) {
            // Do not catch this error to allow
            // the mapping service to collect errors to show in the UI
            }
            value = jsArray;
            break;
        case DATE:
            LocalDate localDate = entity.getLocalDate(attrName);
            if (localDate != null) {
                value = localDate.atStartOfDay(ZoneId.systemDefault()).toInstant().toEpochMilli();
            }
            break;
        case DATE_TIME:
            Instant instant = entity.getInstant(attrName);
            if (instant != null) {
                value = instant.toEpochMilli();
            }
            break;
        case DECIMAL:
            value = entity.getDouble(attrName);
            break;
        case EMAIL:
        case ENUM:
        case HTML:
        case HYPERLINK:
        case SCRIPT:
        case STRING:
        case TEXT:
            value = entity.getString(attrName);
            break;
        case INT:
            value = entity.getInt(attrName);
            break;
        case LONG:
            value = entity.getLong(attrName);
            break;
        case COMPOUND:
            throw new RuntimeException(format("Illegal attribute type [%s]", attrType.toString()));
        default:
            throw new UnexpectedEnumException(attrType);
    }
    return value;
}