Examples with Database org.molgenis.emx2.Database used on opensource projects

Example 1 with Database

use of org.molgenis.emx2.Database in project molgenis-emx2 by molgenis.

the class TestEmx2Roles method testRolesIO.

@Test
public void testRolesIO() {
    // create user roles
    schema.addMember("bofke", "Viewer");
    TableStore store = new TableStoreForCsvInMemory();
    // export
    Emx2Members.outputRoles(store, schema);
    // empty the database, verify
    schema = schema.getDatabase().dropCreateSchema(TestEmx2Roles.class.getSimpleName());
    assertEquals(0, schema.getMembers().size());
    // import and see if consistent
    Emx2Members.inputRoles(store, schema);
    List<Member> members = schema.getMembers();
    assertEquals("bofke", members.get(0).getUser());
    assertEquals("Viewer", members.get(0).getRole());
}

Example 2 with Database

use of org.molgenis.emx2.Database in project molgenis-emx2 by molgenis.

the class TestEmx2Roles method setup.

@BeforeClass
public static void setup() {
    Database database = TestDatabaseFactory.getTestDatabase();
    schema = database.dropCreateSchema(TestEmx2Roles.class.getSimpleName());
}

Example 3 with Database

use of org.molgenis.emx2.Database in project molgenis-emx2 by molgenis.

the class TestImportTableTask method setup.

@BeforeClass
public static void setup() {
    Database database = TestDatabaseFactory.getTestDatabase();
    schema = database.dropCreateSchema(TestImportTableTask.class.getSimpleName());
}

Example 4 with Database

use of org.molgenis.emx2.Database in project molgenis-emx2 by molgenis.

the class Benchmark method testCopyInAndOut.

public void testCopyInAndOut() {
    Database database = TestDatabaseFactory.getTestDatabase();
    Schema schema = database.dropCreateSchema(Benchmark.class.getSimpleName());
    int aSize = 50;
    int bSize = 100000;
    Table a = schema.create(table("TableA").add(column("ID").setPkey()));
    List<String> values = new ArrayList<>();
    Table b = schema.create(table("TableB").add(column("ID").setPkey()).add(column("ref").setType(REF_ARRAY).setRefTable("TableA")));
    // Table c =
    // schema.create(
    // table("TableC")
    // .add(column("ID").setPkey())
    // .add(column("ref").setType(MREF).setRefTable("TableA")));
    StopWatch.start("benchmark started");
    List<Row> aRows = new ArrayList<>();
    for (int i = 0; i < aSize; i++) {
        aRows.add(new Row().set("ID", "row" + i));
        values.add("row" + i);
    }
    StopWatch.start("benchmark1");
    a.insert(aRows);
    StopWatch.print("inserted primary", aSize);
    aRows.clear();
    List<Row> bRows = new ArrayList<>();
    for (int i = 0; i < bSize; i++) {
        bRows.add(new Row().set("ID", "row" + i).set("ref", values));
    }
    StopWatch.start("benchmark2 started");
    b.insert(bRows);
    StopWatch.print("inserted ref_array", bSize);
    bRows.clear();
// List<Row> cRows = new ArrayList<>();
// for (int i = 0; i < bSize; i++) {
// cRows.add(new Row().set("ID", "row" + i).set("ref", values));
// }
// StopWatch.start("benchmark3 started");
// c.insert(cRows);
// StopWatch.print("inserted mref", bSize);
// cRows.clear();
// StopWatch.print("inserted mref", bSize);
// ref_array
}

Example 5 with Database

use of org.molgenis.emx2.Database in project molgenis-emx2 by molgenis.

the class TestMetaDataIsStoredForNextSessions method testArrayTypesTest.

@Test
public void testArrayTypesTest() {
    Schema schema = database.dropCreateSchema(SCHEMA_NAME + "3");
    ArrayTypeTestExample.createSimpleTypeTest(schema.getMetadata());
    try {
        CompareTools.reloadAndCompare(database, schema);
    } catch (Exception e) {
        fail(e.getMessage());
    }
}