Examples with Pair org.molgenis.util.Pair used on opensource projects

Example 1 with Pair

use of org.molgenis.util.Pair in project molgenis by molgenis.

the class EntityUtils method getReferencingEntityType.

public static List<Pair<EntityType, List<Attribute>>> getReferencingEntityType(EntityType entityType, DataService dataService) {
    List<Pair<EntityType, List<Attribute>>> referencingEntityType = newArrayList();
    // get entity types that referencing the given entity (including self)
    String entityTypeId = entityType.getId();
    dataService.getEntityTypeIds().forEach(otherEntityName -> {
        EntityType otherEntityType = dataService.getEntityType(otherEntityName);
        // get referencing attributes for other entity
        List<Attribute> referencingAttributes = null;
        for (Attribute attribute : otherEntityType.getAtomicAttributes()) {
            EntityType refEntityType = attribute.getRefEntity();
            if (refEntityType != null && refEntityType.getId().equals(entityTypeId)) {
                if (referencingAttributes == null)
                    referencingAttributes = newArrayList();
                referencingAttributes.add(attribute);
            }
        }
        // store references
        if (referencingAttributes != null) {
            referencingEntityType.add(new Pair<>(otherEntityType, referencingAttributes));
        }
    });
    return referencingEntityType;
}

Example 2 with Pair

use of org.molgenis.util.Pair in project molgenis by molgenis.

the class PermissionRegistryImpl method getPermissions.

@Override
public Multimap<ObjectIdentity, Pair<Permission, Sid>> getPermissions() {
    ImmutableMultimap.Builder<ObjectIdentity, Pair<Permission, Sid>> mapBuilder = new ImmutableMultimap.Builder<>();
    Group allUsersGroup = dataService.query(GROUP, Group.class).eq(NAME, ALL_USER_GROUP).findOne();
    Sid allUsersGroupSid = createSid(allUsersGroup);
    ObjectIdentity pluginIdentity = new PluginIdentity(UserAccountController.ID);
    mapBuilder.putAll(pluginIdentity, new Pair<>(PluginPermission.READ, allUsersGroupSid));
    dataService.findAll(ENTITY_TYPE_META_DATA, Stream.of(ENTITY_TYPE_META_DATA, ATTRIBUTE_META_DATA, PACKAGE, TAG, LANGUAGE, L10N_STRING, FILE_META, DECORATOR_CONFIGURATION), EntityType.class).forEach(entityType -> {
        ObjectIdentity entityTypeIdentity = new EntityTypeIdentity(entityType);
        Permission entityTypePermissions = EntityTypePermissionUtils.getCumulativePermission(EntityTypePermission.READ);
        mapBuilder.putAll(entityTypeIdentity, new Pair<>(entityTypePermissions, allUsersGroupSid));
    });
    return mapBuilder.build();
}

Example 3 with Pair

use of org.molgenis.util.Pair in project molgenis by molgenis.

the class PermissionRegistryImplTest method testGetPermissions.

@Test
public void testGetPermissions() {
    @SuppressWarnings("unchecked") Query<Group> query = mock(Query.class);
    when(query.eq("name", "All Users")).thenReturn(query);
    when(dataService.query("sys_sec_Group", Group.class)).thenReturn(query);
    Group group = when(mock(Group.class).getId()).thenReturn("group0").getMock();
    when(query.findOne()).thenReturn(group);
    Multimap<ObjectIdentity, Pair<Permission, Sid>> expectedPermissions = ImmutableListMultimap.of(new PluginIdentity("useraccount"), new Pair<>(PluginPermission.READ, new GrantedAuthoritySid("ROLE_group0")));
    assertEquals(permissionRegistryImpl.getPermissions(), expectedPermissions);
}

Example 4 with Pair

use of org.molgenis.util.Pair in project molgenis by molgenis.

the class PermissionPopulatorTest method testPopulate.

@Test
public void testPopulate() {
    ApplicationContext applicationContext = mock(ApplicationContext.class);
    ObjectIdentity objectIdentity0 = new ObjectIdentityImpl("type", "id0");
    PermissionRegistry permissionRegistry0 = mock(PermissionRegistry.class);
    Multimap<ObjectIdentity, Pair<Permission, Sid>> registry0Permissions = ArrayListMultimap.create();
    registry0Permissions.put(objectIdentity0, new Pair<>(mock(Permission.class), mock(Sid.class)));
    when(permissionRegistry0.getPermissions()).thenReturn(registry0Permissions);
    ObjectIdentity objectIdentity1 = new ObjectIdentityImpl("type", "id1");
    Multimap<ObjectIdentity, Pair<Permission, Sid>> registry1Permissions = ArrayListMultimap.create();
    registry1Permissions.put(objectIdentity1, new Pair<>(mock(Permission.class), mock(Sid.class)));
    PermissionRegistry permissionRegistry1 = mock(PermissionRegistry.class);
    when(permissionRegistry1.getPermissions()).thenReturn(registry1Permissions);
    Map<String, PermissionRegistry> registryMap = new LinkedHashMap<>();
    registryMap.put("registry0", permissionRegistry0);
    registryMap.put("registry1", permissionRegistry1);
    when(applicationContext.getBeansOfType(PermissionRegistry.class)).thenReturn(registryMap);
    MutableAcl acl0 = mock(MutableAcl.class);
    doReturn(acl0).when(mutableAclService).readAclById(objectIdentity0);
    MutableAcl acl1 = mock(MutableAcl.class);
    doReturn(acl1).when(mutableAclService).readAclById(objectIdentity1);
    permissionPopulator.populate(applicationContext);
    verify(mutableAclService).updateAcl(acl0);
    verify(mutableAclService).updateAcl(acl1);
}

Example 5 with Pair

use of org.molgenis.util.Pair in project molgenis by molgenis.

the class WebAppPermissionRegistry method getPermissions.

@Override
public Multimap<ObjectIdentity, Pair<Permission, Sid>> getPermissions() {
    User anonymousUser = dataService.query(USER, User.class).eq(USERNAME, ANONYMOUS_USERNAME).findOne();
    Group allUsersGroup = dataService.query(GROUP, Group.class).eq(NAME, ALL_USER_GROUP).findOne();
    ObjectIdentity pluginIdentity = new PluginIdentity(HomeController.ID);
    return new ImmutableMultimap.Builder<ObjectIdentity, Pair<Permission, Sid>>().putAll(pluginIdentity, new Pair<>(PluginPermission.READ, createSid(anonymousUser)), new Pair<>(PluginPermission.READ, createSid(allUsersGroup))).build();
}