use of org.monarchinitiative.loinc2hpofhir.fhir2hpo.Uberobservation in project loinc2hpo by monarch-initiative.
the class Dstu3ObservationTest method testGlucoseNormal.
@Test
void testGlucoseNormal() throws IOException {
String jsonPath = "json/glucoseNormal.fhir";
Observation glucoseAbnormal = importDstu3Observation(jsonPath);
Uberobservation uberobservation = new ObservationDtu3(glucoseAbnormal);
LoincId expectedLoincId = new LoincId("15074-8");
Optional<LoincId> opt = uberobservation.getLoincId();
assertTrue(opt.isPresent());
assertEquals(expectedLoincId, opt.get());
Optional<Outcome> opt2 = uberobservation.getOutcome();
assertTrue(opt2.isPresent());
assertEquals(Outcome.NORMAL(), opt2.get());
assertNotEquals(Outcome.LOW(), opt2.get());
assertNotEquals(Outcome.HIGH(), opt2.get());
}
use of org.monarchinitiative.loinc2hpofhir.fhir2hpo.Uberobservation in project loinc2hpo by monarch-initiative.
the class Dstu3ObservationTest method testGlucoseHigh.
@Test
void testGlucoseHigh() throws IOException {
String jsonPath = "json/glucoseHigh.fhir";
Observation glucoseHigh = importDstu3Observation(jsonPath);
Uberobservation uberobservation = new ObservationDtu3(glucoseHigh);
LoincId expectedLoincId = new LoincId("15074-8");
Optional<LoincId> opt = uberobservation.getLoincId();
assertTrue(opt.isPresent());
assertEquals(expectedLoincId, opt.get());
Optional<Outcome> opt2 = uberobservation.getOutcome();
assertTrue(opt2.isPresent());
assertEquals(Outcome.HIGH(), opt2.get());
assertNotEquals(Outcome.LOW(), opt2.get());
assertNotEquals(Outcome.NORMAL(), opt2.get());
}
use of org.monarchinitiative.loinc2hpofhir.fhir2hpo.Uberobservation in project loinc2hpo by monarch-initiative.
the class ObservationWithValueRangeTest method highHbWithReferenceRange.
/**
* This observation does not have an Interpretation, but we can infer the value to be high
* based on the reference range.
*/
@Test
public void highHbWithReferenceRange() {
Observation observation = highHemoglobinWithValueRangeObservation();
Uberobservation uberobservation = new ObservationDtu3(observation);
LoincId erysInBlood = new LoincId("789-8");
Optional<LoincId> opt = uberobservation.getLoincId();
assertTrue(opt.isPresent());
assertEquals(erysInBlood, opt.get());
Optional<Outcome> outcomeOpt = uberobservation.getOutcome();
assertTrue(outcomeOpt.isPresent());
assertEquals(Outcome.HIGH(), outcomeOpt.get());
}
use of org.monarchinitiative.loinc2hpofhir.fhir2hpo.Uberobservation in project loinc2hpo by monarch-initiative.
the class ObservationWithInterpretationTest method testLowHemoglobinWithoutInterpretation.
/**
* Low erythrocytes with L interpretation.
*/
@Test
public void testLowHemoglobinWithoutInterpretation() {
Observation lowHb = lowHemoglobinObservation();
Uberobservation uberobservation = new ObservationDtu3(lowHb);
LoincId erysInBlood = new LoincId("789-8");
Optional<LoincId> opt = uberobservation.getLoincId();
assertTrue(opt.isPresent());
assertEquals(erysInBlood, opt.get());
Optional<Outcome> outcomeOpt = uberobservation.getOutcome();
assertTrue(outcomeOpt.isPresent());
assertEquals(Outcome.LOW(), outcomeOpt.get());
}
use of org.monarchinitiative.loinc2hpofhir.fhir2hpo.Uberobservation in project loinc2hpo by monarch-initiative.
the class Dstu3ObservationTest method testGlucoseLow.
@Test
void testGlucoseLow() throws IOException {
String jsonPath = "json/glucoseLow.fhir";
Observation glucoseAbnormal = importDstu3Observation(jsonPath);
Uberobservation uberobservation = new ObservationDtu3(glucoseAbnormal);
LoincId expectedLoincId = new LoincId("15074-8");
Optional<LoincId> opt = uberobservation.getLoincId();
assertTrue(opt.isPresent());
assertEquals(expectedLoincId, opt.get());
Optional<Outcome> opt2 = uberobservation.getOutcome();
assertTrue(opt2.isPresent());
assertEquals(Outcome.LOW(), opt2.get());
assertNotEquals(Outcome.NORMAL(), opt2.get());
assertNotEquals(Outcome.HIGH(), opt2.get());
}
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