use of org.mycore.mets.model.struct.Fptr in project mycore by MyCoRe-Org.
the class MCRMetsSave method updateOnImageFile.
private static void updateOnImageFile(Document mets, String fileId, String path) {
LOGGER.debug("FILE is a image!");
// check if custom files are present and save the ids
String[] customFileGroups = { MCRMetsFileUse.TRANSCRIPTION.toString(), MCRMetsFileUse.ALTO.toString(), MCRMetsFileUse.TRANSLATION.toString() };
// add to structMap physical
PhysicalSubDiv div = new PhysicalSubDiv(PhysicalSubDiv.ID_PREFIX + fileId, PhysicalSubDiv.TYPE_PAGE);
div.add(new Fptr(fileId));
Arrays.stream(customFileGroups).map(customFileGroup -> searchFileInGroup(mets, path, customFileGroup)).filter(Objects::nonNull).map(Fptr::new).forEach(div::add);
// actually alter the mets document
Element structMapPhys = getPhysicalStructmap(mets);
structMapPhys.addContent(div.asElement());
// add to structLink
SmLink smLink = getDefaultSmLink(mets, div);
Element structLink = getStructLink(mets);
structLink.addContent(smLink.asElement());
}
use of org.mycore.mets.model.struct.Fptr in project mycore by MyCoRe-Org.
the class MCRDFGLinkServlet method getOrderNumber.
private static int getOrderNumber(Document metsDoc, String fileHref) {
int orderNumber = -1;
String fileID = null;
try {
Mets mets = new Mets(metsDoc);
List<FileGrp> fileGroups = mets.getFileSec().getFileGroups();
for (FileGrp fileGrp : fileGroups) {
List<File> fileList = fileGrp.getFileList();
for (File file : fileList) {
FLocat fLocat = file.getFLocat();
if (fLocat.getHref().equals(MCRXMLFunctions.encodeURIPath(fileHref)))
fileID = file.getId();
}
}
if (fileID != null) {
PhysicalStructMap structMap = (PhysicalStructMap) mets.getStructMap(PhysicalStructMap.TYPE);
PhysicalDiv rootDiv = structMap.getDivContainer();
List<PhysicalSubDiv> children = rootDiv.getChildren();
for (int index = 0; index < children.size(); index++) {
PhysicalSubDiv physicalSubDiv = children.get(index);
List<Fptr> fptrList = physicalSubDiv.getChildren();
for (Fptr fptr : fptrList) {
if (fptr.getFileId().equals(fileID))
orderNumber = index + 1;
}
}
}
} catch (Exception e) {
throw new MCRPersistenceException("could not parse mets.xml", e);
}
return orderNumber;
}
use of org.mycore.mets.model.struct.Fptr in project mycore by MyCoRe-Org.
the class MCRMetsSave method updateFiles.
/**
* Call this method to update the mets.xml if files of the derivate have changed. Files will be added or removed
* from the mets:fileSec and mets:StructMap[@type=PHYSICAL]. The mets:structLink part will be rebuild after.
*
* <p>This method takes care of the group assignment. For example: image files will be added to the MASTER
* group and ALTO files to the ALTO group. It will also bundle files with the same name e.g. sample1.tiff and
* alto/sample1.xml to the same physical struct map div.</p>
*
* <p><b>Important:</b> This method does not update the mets.xml in the derivate, its just updating the given mets
* instance.</p>
*
* @param mets the mets to update
* @param derivatePath path to the derivate -> required for looking up new files
* @throws IOException derivate couldn't be read
*/
public static void updateFiles(Mets mets, final MCRPath derivatePath) throws IOException {
List<String> metsFiles = mets.getFileSec().getFileGroups().stream().flatMap(g -> g.getFileList().stream()).map(File::getFLocat).map(FLocat::getHref).collect(Collectors.toList());
List<String> derivateFiles = Files.walk(derivatePath).filter(MCRStreamUtils.not(Files::isDirectory)).map(MCRPath::toMCRPath).map(MCRPath::getOwnerRelativePath).map(path -> path.substring(1)).filter(href -> !"mets.xml".equals(href)).collect(Collectors.toList());
ArrayList<String> removedFiles = new ArrayList<>(metsFiles);
removedFiles.removeAll(derivateFiles);
ArrayList<String> addedFiles = new ArrayList<>(derivateFiles);
Collections.sort(addedFiles);
addedFiles.removeAll(metsFiles);
StructLink structLink = mets.getStructLink();
PhysicalStructMap physicalStructMap = mets.getPhysicalStructMap();
List<String> unlinkedLogicalIds = new ArrayList<>();
// remove files
PhysicalDiv physicalDiv = physicalStructMap.getDivContainer();
removedFiles.forEach(href -> {
File file = null;
// remove from fileSec
for (FileGrp grp : mets.getFileSec().getFileGroups()) {
file = grp.getFileByHref(href);
if (file != null) {
grp.removeFile(file);
break;
}
}
if (file == null) {
return;
}
// remove from physical
PhysicalSubDiv physicalSubDiv = physicalDiv.byFileId(file.getId());
physicalSubDiv.remove(physicalSubDiv.getFptr(file.getId()));
if (physicalSubDiv.getChildren().isEmpty()) {
physicalDiv.remove(physicalSubDiv);
}
// remove from struct link
structLink.getSmLinkByTo(physicalSubDiv.getId()).forEach(smLink -> {
structLink.removeSmLink(smLink);
if (structLink.getSmLinkByFrom(smLink.getFrom()).isEmpty()) {
unlinkedLogicalIds.add(smLink.getFrom());
}
});
});
// fix unlinked logical divs
if (!unlinkedLogicalIds.isEmpty()) {
// get first physical div
List<PhysicalSubDiv> physicalChildren = physicalStructMap.getDivContainer().getChildren();
String firstPhysicalID = physicalChildren.isEmpty() ? physicalStructMap.getDivContainer().getId() : physicalChildren.get(0).getId();
// a logical div is not linked anymore -> link with first physical div
unlinkedLogicalIds.forEach(from -> structLink.addSmLink(new SmLink(from, firstPhysicalID)));
}
// get last logical div
LogicalDiv divContainer = mets.getLogicalStructMap().getDivContainer();
List<LogicalDiv> descendants = divContainer.getDescendants();
LogicalDiv lastLogicalDiv = descendants.isEmpty() ? divContainer : descendants.get(descendants.size() - 1);
// add files
addedFiles.forEach(href -> {
MCRPath filePath = (MCRPath) derivatePath.resolve(href);
String fileBase = getFileBase(href);
try {
String fileGroupUse = MCRMetsSave.getFileGroupUse(filePath);
// build file
String mimeType = MCRContentTypes.probeContentType(filePath);
String fileId = fileGroupUse.toLowerCase(Locale.ROOT) + "_" + fileBase;
File file = new File(fileId, mimeType);
file.setFLocat(new FLocat(LOCTYPE.URL, href));
// fileSec
FileGrp fileGroup = mets.getFileSec().getFileGroup(fileGroupUse);
if (fileGroup == null) {
fileGroup = new FileGrp(fileGroupUse);
mets.getFileSec().addFileGrp(fileGroup);
}
fileGroup.addFile(file);
// structMap physical
String existingFileID = mets.getFileSec().getFileGroups().stream().filter(grp -> !grp.getUse().equals(fileGroupUse)).flatMap(grp -> grp.getFileList().stream()).filter(brotherFile -> fileBase.equals(getFileBase(brotherFile.getFLocat().getHref()))).map(File::getId).findAny().orElse(null);
PhysicalSubDiv physicalSubDiv;
if (existingFileID != null) {
// there is a file (e.g. img or alto) which the same file base -> add the file to this mets:div
physicalSubDiv = physicalDiv.byFileId(existingFileID);
physicalSubDiv.add(new Fptr(file.getId()));
} else {
// there is no mets:div with this file
physicalSubDiv = new PhysicalSubDiv(PhysicalSubDiv.ID_PREFIX + fileBase, PhysicalSubDiv.TYPE_PAGE);
physicalSubDiv.add(new Fptr(file.getId()));
physicalDiv.add(physicalSubDiv);
}
// add to struct link
structLink.addSmLink(new SmLink(lastLogicalDiv.getId(), physicalSubDiv.getId()));
} catch (Exception exc) {
LOGGER.error("Unable to add file {} to mets.xml of {}", href, derivatePath.getOwner(), exc);
}
});
}
use of org.mycore.mets.model.struct.Fptr in project mycore by MyCoRe-Org.
the class MCRMetsSave method updateOnCustomFile.
private static void updateOnCustomFile(Document mets, String fileId, String path) {
LOGGER.debug("FILE is a custom file (ALTO/TEI)!");
String matchId = searchFileInGroup(mets, path, MCRMetsFileUse.DEFAULT.toString());
if (matchId == null) {
// there is no file wich belongs to the alto xml so just return
LOGGER.warn("no file found wich belongs to the custom xml : {}", path);
return;
}
// check if there is a physical file
Element physPageElement = getPhysicalFile(mets, matchId);
if (physPageElement != null) {
physPageElement.addContent(new Fptr(fileId).asElement());
LOGGER.warn("physical page found for file {}", matchId);
} else {
LOGGER.warn("no physical page found for file {}", matchId);
}
}
use of org.mycore.mets.model.struct.Fptr in project mycore by MyCoRe-Org.
the class MCRSimpleModelXMLConverter method buildPhysicalPages.
private static void buildPhysicalPages(MCRMetsSimpleModel msm, Mets mets, Map<MCRMetsPage, String> pageIdMap, Map<String, String> idToNewIDMap) {
List<MCRMetsPage> pageList = msm.getMetsPageList();
PhysicalStructMap structMap = (PhysicalStructMap) mets.getStructMap(PhysicalStructMap.TYPE);
structMap.setDivContainer(new PhysicalDiv(PHYSICAL_ID_PREFIX + UUID.randomUUID(), PhysicalDiv.TYPE_PHYS_SEQ));
for (MCRMetsPage page : pageList) {
String id = page.getId();
PhysicalSubDiv physicalSubDiv = new PhysicalSubDiv(id, DEFAULT_PHYSICAL_TYPE);
String orderLabel = page.getOrderLabel();
if (orderLabel != null) {
physicalSubDiv.setOrderLabel(orderLabel);
}
String contentIds = page.getContentIds();
if (contentIds != null) {
physicalSubDiv.setContentids(contentIds);
}
structMap.getDivContainer().add(physicalSubDiv);
pageIdMap.put(page, id);
page.getFileList().forEach((simpleFile) -> {
String href = simpleFile.getHref();
String fileID = simpleFile.getId();
String mimeType = simpleFile.getMimeType();
MCRMetsFileUse use = simpleFile.getUse();
idToNewIDMap.put(simpleFile.getId(), fileID);
File file = new File(fileID, mimeType);
FLocat fLocat = new FLocat(LOCTYPE.URL, href);
file.setFLocat(fLocat);
FileGrp fileGrp = getFileGroup(mets, use);
fileGrp.addFile(file);
physicalSubDiv.add(new Fptr(fileID));
});
}
}
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