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Example 11 with LogicalDiv

use of org.mycore.mets.model.struct.LogicalDiv in project mycore by MyCoRe-Org.

the class MCRMETSHierarchyGenerator method validateLogicalStruct.

/**
 * Its important to remove not linked logical divs without children to
 * get a valid logical structure.
 *
 * @param logicalDiv the logical div to check
 * @return true if the logical struct is valid otherwise false
 */
private boolean validateLogicalStruct(LogicalDiv logicalDiv) {
    // has link
    String logicalDivId = logicalDiv.getId();
    for (List<String> logivalDivIDs : structLinkMap.values()) {
        if (logivalDivIDs.contains(logicalDivId)) {
            return true;
        }
    }
    // has children with link
    Iterator<LogicalDiv> it = logicalDiv.getChildren().iterator();
    while (it.hasNext()) {
        LogicalDiv child = it.next();
        if (validateLogicalStruct(child)) {
            return true;
        }
        // nothing -> delete it
        it.remove();
    }
    return false;
}
Also used : LogicalDiv(org.mycore.mets.model.struct.LogicalDiv)

Example 12 with LogicalDiv

use of org.mycore.mets.model.struct.LogicalDiv in project mycore by MyCoRe-Org.

the class MCRMetsSave method updateFiles.

/**
 * Call this method to update the mets.xml if files of the derivate have changed. Files will be added or removed
 * from the mets:fileSec and mets:StructMap[@type=PHYSICAL]. The mets:structLink part will be rebuild after.
 *
 * <p>This method takes care of the group assignment. For example: image files will be added to the MASTER
 * group and ALTO files to the ALTO group. It will also bundle files with the same name e.g. sample1.tiff and
 * alto/sample1.xml to the same physical struct map div.</p>
 *
 * <p><b>Important:</b> This method does not update the mets.xml in the derivate, its just updating the given mets
 * instance.</p>
 *
 * @param mets the mets to update
 * @param derivatePath path to the derivate -&gt; required for looking up new files
 * @throws IOException derivate couldn't be read
 */
public static void updateFiles(Mets mets, final MCRPath derivatePath) throws IOException {
    List<String> metsFiles = mets.getFileSec().getFileGroups().stream().flatMap(g -> g.getFileList().stream()).map(File::getFLocat).map(FLocat::getHref).collect(Collectors.toList());
    List<String> derivateFiles = Files.walk(derivatePath).filter(MCRStreamUtils.not(Files::isDirectory)).map(MCRPath::toMCRPath).map(MCRPath::getOwnerRelativePath).map(path -> path.substring(1)).filter(href -> !"mets.xml".equals(href)).collect(Collectors.toList());
    ArrayList<String> removedFiles = new ArrayList<>(metsFiles);
    removedFiles.removeAll(derivateFiles);
    ArrayList<String> addedFiles = new ArrayList<>(derivateFiles);
    Collections.sort(addedFiles);
    addedFiles.removeAll(metsFiles);
    StructLink structLink = mets.getStructLink();
    PhysicalStructMap physicalStructMap = mets.getPhysicalStructMap();
    List<String> unlinkedLogicalIds = new ArrayList<>();
    // remove files
    PhysicalDiv physicalDiv = physicalStructMap.getDivContainer();
    removedFiles.forEach(href -> {
        File file = null;
        // remove from fileSec
        for (FileGrp grp : mets.getFileSec().getFileGroups()) {
            file = grp.getFileByHref(href);
            if (file != null) {
                grp.removeFile(file);
                break;
            }
        }
        if (file == null) {
            return;
        }
        // remove from physical
        PhysicalSubDiv physicalSubDiv = physicalDiv.byFileId(file.getId());
        physicalSubDiv.remove(physicalSubDiv.getFptr(file.getId()));
        if (physicalSubDiv.getChildren().isEmpty()) {
            physicalDiv.remove(physicalSubDiv);
        }
        // remove from struct link
        structLink.getSmLinkByTo(physicalSubDiv.getId()).forEach(smLink -> {
            structLink.removeSmLink(smLink);
            if (structLink.getSmLinkByFrom(smLink.getFrom()).isEmpty()) {
                unlinkedLogicalIds.add(smLink.getFrom());
            }
        });
    });
    // fix unlinked logical divs
    if (!unlinkedLogicalIds.isEmpty()) {
        // get first physical div
        List<PhysicalSubDiv> physicalChildren = physicalStructMap.getDivContainer().getChildren();
        String firstPhysicalID = physicalChildren.isEmpty() ? physicalStructMap.getDivContainer().getId() : physicalChildren.get(0).getId();
        // a logical div is not linked anymore -> link with first physical div
        unlinkedLogicalIds.forEach(from -> structLink.addSmLink(new SmLink(from, firstPhysicalID)));
    }
    // get last logical div
    LogicalDiv divContainer = mets.getLogicalStructMap().getDivContainer();
    List<LogicalDiv> descendants = divContainer.getDescendants();
    LogicalDiv lastLogicalDiv = descendants.isEmpty() ? divContainer : descendants.get(descendants.size() - 1);
    // add files
    addedFiles.forEach(href -> {
        MCRPath filePath = (MCRPath) derivatePath.resolve(href);
        String fileBase = getFileBase(href);
        try {
            String fileGroupUse = MCRMetsSave.getFileGroupUse(filePath);
            // build file
            String mimeType = MCRContentTypes.probeContentType(filePath);
            String fileId = fileGroupUse.toLowerCase(Locale.ROOT) + "_" + fileBase;
            File file = new File(fileId, mimeType);
            file.setFLocat(new FLocat(LOCTYPE.URL, href));
            // fileSec
            FileGrp fileGroup = mets.getFileSec().getFileGroup(fileGroupUse);
            if (fileGroup == null) {
                fileGroup = new FileGrp(fileGroupUse);
                mets.getFileSec().addFileGrp(fileGroup);
            }
            fileGroup.addFile(file);
            // structMap physical
            String existingFileID = mets.getFileSec().getFileGroups().stream().filter(grp -> !grp.getUse().equals(fileGroupUse)).flatMap(grp -> grp.getFileList().stream()).filter(brotherFile -> fileBase.equals(getFileBase(brotherFile.getFLocat().getHref()))).map(File::getId).findAny().orElse(null);
            PhysicalSubDiv physicalSubDiv;
            if (existingFileID != null) {
                // there is a file (e.g. img or alto) which the same file base -> add the file to this mets:div
                physicalSubDiv = physicalDiv.byFileId(existingFileID);
                physicalSubDiv.add(new Fptr(file.getId()));
            } else {
                // there is no mets:div with this file
                physicalSubDiv = new PhysicalSubDiv(PhysicalSubDiv.ID_PREFIX + fileBase, PhysicalSubDiv.TYPE_PAGE);
                physicalSubDiv.add(new Fptr(file.getId()));
                physicalDiv.add(physicalSubDiv);
            }
            // add to struct link
            structLink.addSmLink(new SmLink(lastLogicalDiv.getId(), physicalSubDiv.getId()));
        } catch (Exception exc) {
            LOGGER.error("Unable to add file {} to mets.xml of {}", href, derivatePath.getOwner(), exc);
        }
    });
}
Also used : Arrays(java.util.Arrays) URLDecoder(java.net.URLDecoder) StructLink(org.mycore.mets.model.struct.StructLink) URISyntaxException(java.net.URISyntaxException) LOCTYPE(org.mycore.mets.model.struct.LOCTYPE) MCRMarkManager(org.mycore.datamodel.common.MCRMarkManager) MCRDerivate(org.mycore.datamodel.metadata.MCRDerivate) Document(org.jdom2.Document) JDOMException(org.jdom2.JDOMException) Locale(java.util.Locale) FileGrp(org.mycore.mets.model.files.FileGrp) Map(java.util.Map) MCRMetsFileUse(org.mycore.mets.model.simple.MCRMetsFileUse) File(org.mycore.mets.model.files.File) Path(java.nio.file.Path) SimpleFileVisitor(java.nio.file.SimpleFileVisitor) PhysicalStructMap(org.mycore.mets.model.struct.PhysicalStructMap) Format(org.jdom2.output.Format) MCRPath(org.mycore.datamodel.niofs.MCRPath) Collection(java.util.Collection) MCRPersistenceException(org.mycore.common.MCRPersistenceException) Set(java.util.Set) Mets(org.mycore.mets.model.Mets) Collectors(java.util.stream.Collectors) LogicalDiv(org.mycore.mets.model.struct.LogicalDiv) XPathExpression(org.jdom2.xpath.XPathExpression) SmLink(org.mycore.mets.model.struct.SmLink) Objects(java.util.Objects) FileVisitResult(java.nio.file.FileVisitResult) List(java.util.List) Logger(org.apache.logging.log4j.Logger) MCRObjectID(org.mycore.datamodel.metadata.MCRObjectID) LogicalStructMap(org.mycore.mets.model.struct.LogicalStructMap) SAXException(org.xml.sax.SAXException) MCRStreamUtils(org.mycore.common.MCRStreamUtils) MCRPathContent(org.mycore.common.content.MCRPathContent) UnsupportedEncodingException(java.io.UnsupportedEncodingException) Element(org.jdom2.Element) PhysicalDiv(org.mycore.mets.model.struct.PhysicalDiv) XPathFactory(org.jdom2.xpath.XPathFactory) MCRConstants(org.mycore.common.MCRConstants) AtomicBoolean(java.util.concurrent.atomic.AtomicBoolean) HashMap(java.util.HashMap) MCRConfiguration(org.mycore.common.config.MCRConfiguration) MessageFormat(java.text.MessageFormat) ArrayList(java.util.ArrayList) HashSet(java.util.HashSet) MCRXMLFunctions(org.mycore.common.xml.MCRXMLFunctions) MCRDirectory(org.mycore.datamodel.ifs2.MCRDirectory) OutputStream(java.io.OutputStream) MCRContentTypes(org.mycore.datamodel.niofs.MCRContentTypes) Files(java.nio.file.Files) IOException(java.io.IOException) BasicFileAttributes(java.nio.file.attribute.BasicFileAttributes) PhysicalSubDiv(org.mycore.mets.model.struct.PhysicalSubDiv) XMLOutputter(org.jdom2.output.XMLOutputter) Attribute(org.jdom2.Attribute) Fptr(org.mycore.mets.model.struct.Fptr) Paths(java.nio.file.Paths) FLocat(org.mycore.mets.model.files.FLocat) Collections(java.util.Collections) LogManager(org.apache.logging.log4j.LogManager) Filters(org.jdom2.filter.Filters) PhysicalStructMap(org.mycore.mets.model.struct.PhysicalStructMap) ArrayList(java.util.ArrayList) StructLink(org.mycore.mets.model.struct.StructLink) FileGrp(org.mycore.mets.model.files.FileGrp) Fptr(org.mycore.mets.model.struct.Fptr) PhysicalDiv(org.mycore.mets.model.struct.PhysicalDiv) URISyntaxException(java.net.URISyntaxException) JDOMException(org.jdom2.JDOMException) MCRPersistenceException(org.mycore.common.MCRPersistenceException) SAXException(org.xml.sax.SAXException) UnsupportedEncodingException(java.io.UnsupportedEncodingException) IOException(java.io.IOException) PhysicalSubDiv(org.mycore.mets.model.struct.PhysicalSubDiv) LogicalDiv(org.mycore.mets.model.struct.LogicalDiv) SmLink(org.mycore.mets.model.struct.SmLink) FLocat(org.mycore.mets.model.files.FLocat) Files(java.nio.file.Files) MCRPath(org.mycore.datamodel.niofs.MCRPath) File(org.mycore.mets.model.files.File)

Example 13 with LogicalDiv

use of org.mycore.mets.model.struct.LogicalDiv in project mycore by MyCoRe-Org.

the class MCRSimpleModelXMLConverter method buildLogicalSubDiv.

private static void buildLogicalSubDiv(MCRMetsSection metsSection, LogicalDiv parent, Map<MCRMetsSection, String> sectionIdMap, Map<String, String> idToNewIDMap) {
    String id = metsSection.getId();
    LogicalDiv logicalSubDiv = new LogicalDiv(id, metsSection.getType(), metsSection.getLabel());
    if (metsSection.getAltoLinks().size() > 0) {
        Fptr fptr = new Fptr();
        List<Seq> seqList = fptr.getSeqList();
        Seq seq = new Seq();
        seqList.add(seq);
        metsSection.getAltoLinks().forEach(al -> {
            Area area = new Area();
            seq.getAreaList().add(area);
            area.setBetype("IDREF");
            area.setBegin(al.getBegin());
            area.setEnd(al.getEnd());
            String oldID = al.getFile().getId();
            if (!idToNewIDMap.containsKey(oldID)) {
                throw new MCRException("Could not get new id for: " + oldID);
            }
            area.setFileId(idToNewIDMap.get(oldID));
        });
        logicalSubDiv.getFptrList().add(fptr);
    }
    sectionIdMap.put(metsSection, id);
    parent.add(logicalSubDiv);
    int count = 1;
    for (MCRMetsSection section : metsSection.getMetsSectionList()) {
        buildLogicalSubDiv(section, logicalSubDiv, sectionIdMap, idToNewIDMap);
    }
}
Also used : LogicalDiv(org.mycore.mets.model.struct.LogicalDiv) Area(org.mycore.mets.model.struct.Area) MCRException(org.mycore.common.MCRException) Fptr(org.mycore.mets.model.struct.Fptr) Seq(org.mycore.mets.model.struct.Seq) MCRMetsSection(org.mycore.mets.model.simple.MCRMetsSection)

Example 14 with LogicalDiv

use of org.mycore.mets.model.struct.LogicalDiv in project mycore by MyCoRe-Org.

the class MCRXMLSimpleModelConverter method buidRootSection.

private static MCRMetsSection buidRootSection(Mets mets, Map<String, MCRMetsSection> idSectionMap, Map<String, MCRMetsFile> idFileMap) {
    IStructMap structMap = mets.getStructMap(LogicalStructMap.TYPE);
    LogicalStructMap logicalStructMap = (LogicalStructMap) structMap;
    LogicalDiv divContainer = logicalStructMap.getDivContainer();
    return buildSection(divContainer, idSectionMap, null, idFileMap);
}
Also used : IStructMap(org.mycore.mets.model.struct.IStructMap) LogicalStructMap(org.mycore.mets.model.struct.LogicalStructMap) LogicalDiv(org.mycore.mets.model.struct.LogicalDiv)

Example 15 with LogicalDiv

use of org.mycore.mets.model.struct.LogicalDiv in project mycore by MyCoRe-Org.

the class MCRXMLSimpleModelConverter method buildSection.

private static MCRMetsSection buildSection(LogicalDiv current, Map<String, MCRMetsSection> idSectionMap, MCRMetsSection parent, Map<String, MCRMetsFile> idFileMap) {
    MCRMetsSection metsSection = new MCRMetsSection();
    metsSection.setId(current.getId());
    metsSection.setLabel(current.getLabel());
    metsSection.setType(current.getType());
    metsSection.setParent(parent);
    current.getFptrList().forEach(fptr -> fptr.getSeqList().forEach(seq -> {
        seq.getAreaList().forEach(area -> {
            String fileId = area.getFileId();
            String begin = area.getBegin();
            String end = area.getEnd();
            if (!idFileMap.containsKey(fileId)) {
                throw new MCRException("No file with id " + fileId + " found!");
            }
            MCRMetsFile file = idFileMap.get(fileId);
            MCRMetsAltoLink e = new MCRMetsAltoLink(file, begin, end);
            metsSection.addAltoLink(e);
        });
    }));
    if (idSectionMap != null) {
        idSectionMap.put(current.getId(), metsSection);
    }
    List<MCRMetsSection> childSectionList = metsSection.getMetsSectionList();
    current.getChildren().stream().map(section -> MCRXMLSimpleModelConverter.buildSection(section, idSectionMap, metsSection, idFileMap)).forEachOrdered(metsSection::addSection);
    return metsSection;
}
Also used : MCRMetsPage(org.mycore.mets.model.simple.MCRMetsPage) Mets(org.mycore.mets.model.Mets) MCRException(org.mycore.common.MCRException) IStructMap(org.mycore.mets.model.struct.IStructMap) LogicalDiv(org.mycore.mets.model.struct.LogicalDiv) PhysicalSubDiv(org.mycore.mets.model.struct.PhysicalSubDiv) ArrayList(java.util.ArrayList) Document(org.jdom2.Document) MCRMetsFile(org.mycore.mets.model.simple.MCRMetsFile) AbstractMap(java.util.AbstractMap) List(java.util.List) FileGrp(org.mycore.mets.model.files.FileGrp) LogicalStructMap(org.mycore.mets.model.struct.LogicalStructMap) Map(java.util.Map) MCRMetsAltoLink(org.mycore.mets.model.simple.MCRMetsAltoLink) MCRMetsFileUse(org.mycore.mets.model.simple.MCRMetsFileUse) MCRMetsSection(org.mycore.mets.model.simple.MCRMetsSection) MCRMetsSimpleModel(org.mycore.mets.model.simple.MCRMetsSimpleModel) Hashtable(java.util.Hashtable) MCRMetsLink(org.mycore.mets.model.simple.MCRMetsLink) PhysicalStructMap(org.mycore.mets.model.struct.PhysicalStructMap) MCRException(org.mycore.common.MCRException) MCRMetsAltoLink(org.mycore.mets.model.simple.MCRMetsAltoLink) MCRMetsFile(org.mycore.mets.model.simple.MCRMetsFile) MCRMetsSection(org.mycore.mets.model.simple.MCRMetsSection)

Aggregations

LogicalDiv (org.mycore.mets.model.struct.LogicalDiv)15 LogicalStructMap (org.mycore.mets.model.struct.LogicalStructMap)12 PhysicalStructMap (org.mycore.mets.model.struct.PhysicalStructMap)8 FileGrp (org.mycore.mets.model.files.FileGrp)7 ArrayList (java.util.ArrayList)6 Map (java.util.Map)6 PhysicalDiv (org.mycore.mets.model.struct.PhysicalDiv)6 PhysicalSubDiv (org.mycore.mets.model.struct.PhysicalSubDiv)6 HashMap (java.util.HashMap)5 List (java.util.List)5 MCRException (org.mycore.common.MCRException)5 Mets (org.mycore.mets.model.Mets)5 File (org.mycore.mets.model.files.File)5 Collections (java.util.Collections)4 Objects (java.util.Objects)4 LogManager (org.apache.logging.log4j.LogManager)4 Logger (org.apache.logging.log4j.Logger)4 Document (org.jdom2.Document)4 DmdSec (org.mycore.mets.model.sections.DmdSec)4 Fptr (org.mycore.mets.model.struct.Fptr)4