Examples with PhysicalStructMap org.mycore.mets.model.struct.PhysicalStructMap used on opensource projects

Example 6 with PhysicalStructMap

use of org.mycore.mets.model.struct.PhysicalStructMap in project mycore by MyCoRe-Org.

the class MCRMetsSave method updateFiles.

/**
 * Call this method to update the mets.xml if files of the derivate have changed. Files will be added or removed
 * from the mets:fileSec and mets:StructMap[@type=PHYSICAL]. The mets:structLink part will be rebuild after.
 *
 * <p>This method takes care of the group assignment. For example: image files will be added to the MASTER
 * group and ALTO files to the ALTO group. It will also bundle files with the same name e.g. sample1.tiff and
 * alto/sample1.xml to the same physical struct map div.</p>
 *
 * <p><b>Important:</b> This method does not update the mets.xml in the derivate, its just updating the given mets
 * instance.</p>
 *
 * @param mets the mets to update
 * @param derivatePath path to the derivate -&gt; required for looking up new files
 * @throws IOException derivate couldn't be read
 */
public static void updateFiles(Mets mets, final MCRPath derivatePath) throws IOException {
    List<String> metsFiles = mets.getFileSec().getFileGroups().stream().flatMap(g -> g.getFileList().stream()).map(File::getFLocat).map(FLocat::getHref).collect(Collectors.toList());
    List<String> derivateFiles = Files.walk(derivatePath).filter(MCRStreamUtils.not(Files::isDirectory)).map(MCRPath::toMCRPath).map(MCRPath::getOwnerRelativePath).map(path -> path.substring(1)).filter(href -> !"mets.xml".equals(href)).collect(Collectors.toList());
    ArrayList<String> removedFiles = new ArrayList<>(metsFiles);
    removedFiles.removeAll(derivateFiles);
    ArrayList<String> addedFiles = new ArrayList<>(derivateFiles);
    Collections.sort(addedFiles);
    addedFiles.removeAll(metsFiles);
    StructLink structLink = mets.getStructLink();
    PhysicalStructMap physicalStructMap = mets.getPhysicalStructMap();
    List<String> unlinkedLogicalIds = new ArrayList<>();
    // remove files
    PhysicalDiv physicalDiv = physicalStructMap.getDivContainer();
    removedFiles.forEach(href -> {
        File file = null;
        // remove from fileSec
        for (FileGrp grp : mets.getFileSec().getFileGroups()) {
            file = grp.getFileByHref(href);
            if (file != null) {
                grp.removeFile(file);
                break;
            }
        }
        if (file == null) {
            return;
        }
        // remove from physical
        PhysicalSubDiv physicalSubDiv = physicalDiv.byFileId(file.getId());
        physicalSubDiv.remove(physicalSubDiv.getFptr(file.getId()));
        if (physicalSubDiv.getChildren().isEmpty()) {
            physicalDiv.remove(physicalSubDiv);
        }
        // remove from struct link
        structLink.getSmLinkByTo(physicalSubDiv.getId()).forEach(smLink -> {
            structLink.removeSmLink(smLink);
            if (structLink.getSmLinkByFrom(smLink.getFrom()).isEmpty()) {
                unlinkedLogicalIds.add(smLink.getFrom());
            }
        });
    });
    // fix unlinked logical divs
    if (!unlinkedLogicalIds.isEmpty()) {
        // get first physical div
        List<PhysicalSubDiv> physicalChildren = physicalStructMap.getDivContainer().getChildren();
        String firstPhysicalID = physicalChildren.isEmpty() ? physicalStructMap.getDivContainer().getId() : physicalChildren.get(0).getId();
        // a logical div is not linked anymore -> link with first physical div
        unlinkedLogicalIds.forEach(from -> structLink.addSmLink(new SmLink(from, firstPhysicalID)));
    }
    // get last logical div
    LogicalDiv divContainer = mets.getLogicalStructMap().getDivContainer();
    List<LogicalDiv> descendants = divContainer.getDescendants();
    LogicalDiv lastLogicalDiv = descendants.isEmpty() ? divContainer : descendants.get(descendants.size() - 1);
    // add files
    addedFiles.forEach(href -> {
        MCRPath filePath = (MCRPath) derivatePath.resolve(href);
        String fileBase = getFileBase(href);
        try {
            String fileGroupUse = MCRMetsSave.getFileGroupUse(filePath);
            // build file
            String mimeType = MCRContentTypes.probeContentType(filePath);
            String fileId = fileGroupUse.toLowerCase(Locale.ROOT) + "_" + fileBase;
            File file = new File(fileId, mimeType);
            file.setFLocat(new FLocat(LOCTYPE.URL, href));
            // fileSec
            FileGrp fileGroup = mets.getFileSec().getFileGroup(fileGroupUse);
            if (fileGroup == null) {
                fileGroup = new FileGrp(fileGroupUse);
                mets.getFileSec().addFileGrp(fileGroup);
            }
            fileGroup.addFile(file);
            // structMap physical
            String existingFileID = mets.getFileSec().getFileGroups().stream().filter(grp -> !grp.getUse().equals(fileGroupUse)).flatMap(grp -> grp.getFileList().stream()).filter(brotherFile -> fileBase.equals(getFileBase(brotherFile.getFLocat().getHref()))).map(File::getId).findAny().orElse(null);
            PhysicalSubDiv physicalSubDiv;
            if (existingFileID != null) {
                // there is a file (e.g. img or alto) which the same file base -> add the file to this mets:div
                physicalSubDiv = physicalDiv.byFileId(existingFileID);
                physicalSubDiv.add(new Fptr(file.getId()));
            } else {
                // there is no mets:div with this file
                physicalSubDiv = new PhysicalSubDiv(PhysicalSubDiv.ID_PREFIX + fileBase, PhysicalSubDiv.TYPE_PAGE);
                physicalSubDiv.add(new Fptr(file.getId()));
                physicalDiv.add(physicalSubDiv);
            }
            // add to struct link
            structLink.addSmLink(new SmLink(lastLogicalDiv.getId(), physicalSubDiv.getId()));
        } catch (Exception exc) {
            LOGGER.error("Unable to add file {} to mets.xml of {}", href, derivatePath.getOwner(), exc);
        }
    });
}

Example 7 with PhysicalStructMap

use of org.mycore.mets.model.struct.PhysicalStructMap in project mycore by MyCoRe-Org.

the class MCRSimpleModelXMLConverter method buildPhysicalPages.

private static void buildPhysicalPages(MCRMetsSimpleModel msm, Mets mets, Map<MCRMetsPage, String> pageIdMap, Map<String, String> idToNewIDMap) {
    List<MCRMetsPage> pageList = msm.getMetsPageList();
    PhysicalStructMap structMap = (PhysicalStructMap) mets.getStructMap(PhysicalStructMap.TYPE);
    structMap.setDivContainer(new PhysicalDiv(PHYSICAL_ID_PREFIX + UUID.randomUUID(), PhysicalDiv.TYPE_PHYS_SEQ));
    for (MCRMetsPage page : pageList) {
        String id = page.getId();
        PhysicalSubDiv physicalSubDiv = new PhysicalSubDiv(id, DEFAULT_PHYSICAL_TYPE);
        String orderLabel = page.getOrderLabel();
        if (orderLabel != null) {
            physicalSubDiv.setOrderLabel(orderLabel);
        }
        String contentIds = page.getContentIds();
        if (contentIds != null) {
            physicalSubDiv.setContentids(contentIds);
        }
        structMap.getDivContainer().add(physicalSubDiv);
        pageIdMap.put(page, id);
        page.getFileList().forEach((simpleFile) -> {
            String href = simpleFile.getHref();
            String fileID = simpleFile.getId();
            String mimeType = simpleFile.getMimeType();
            MCRMetsFileUse use = simpleFile.getUse();
            idToNewIDMap.put(simpleFile.getId(), fileID);
            File file = new File(fileID, mimeType);
            FLocat fLocat = new FLocat(LOCTYPE.URL, href);
            file.setFLocat(fLocat);
            FileGrp fileGrp = getFileGroup(mets, use);
            fileGrp.addFile(file);
            physicalSubDiv.add(new Fptr(fileID));
        });
    }
}

Example 8 with PhysicalStructMap

use of org.mycore.mets.model.struct.PhysicalStructMap in project mycore by MyCoRe-Org.

the class MCRXMLSimpleModelConverter method buildPageList.

private static List<MCRMetsPage> buildPageList(Mets mets, Map<String, MCRMetsPage> idPageMap, Map<String, MCRMetsFile> idFileMap) {
    PhysicalStructMap physicalStructMap = (PhysicalStructMap) mets.getStructMap(PhysicalStructMap.TYPE);
    List<PhysicalSubDiv> physicalSubDivs = physicalStructMap.getDivContainer().getChildren();
    List<MCRMetsPage> result = new ArrayList<>();
    physicalSubDivs.stream().map((physicalSubDiv) -> {
        // Convert PhysicalSubDiv to MetsPage
        MCRMetsPage metsPage = new MCRMetsPage();
        metsPage.setId(physicalSubDiv.getId());
        metsPage.setOrderLabel(physicalSubDiv.getOrderLabel());
        metsPage.setContentIds(physicalSubDiv.getContentids());
        // Add all MetsFile to the MetsPage
        List<MCRMetsFile> fileList = metsPage.getFileList();
        physicalSubDiv.getChildren().stream().map(file -> idFileMap.get(file.getFileId())).forEachOrdered(fileList::add);
        // return a entry of physicalSubDiv.id and MetsPage
        return new AbstractMap.SimpleEntry<>(physicalSubDiv.getId(), metsPage);
    }).forEachOrdered((entry) -> {
        // Put page to list
        result.add(entry.getValue());
        // Put that generated entry to a Hashtable
        idPageMap.put(entry.getKey(), entry.getValue());
    });
    return result;
}