Examples with DbXref org.nextprot.api.core.domain.DbXref used on opensource projects

Example 76 with DbXref

use of org.nextprot.api.core.domain.DbXref in project nextprot-api by calipho-sib.

the class OboLibraryXrefURLResolverTest method testResolveFMA.

@Test
public void testResolveFMA() throws Exception {
    DbXref xref = DbXrefURLResolverDelegateTest.createDbXref("FMA:62955", "FMA", "http://purl.obolibrary.org/obo/%s");
    Assert.assertEquals("http://purl.obolibrary.org/obo/FMA_62955", resolver.resolve(xref));
}

Example 77 with DbXref

use of org.nextprot.api.core.domain.DbXref in project nextprot-api by calipho-sib.

the class OboLibraryXrefURLResolverTest method testResolvePRO.

@Test
public void testResolvePRO() throws Exception {
    DbXref xref = DbXrefURLResolverDelegateTest.createDbXref("PR:000028527", "PRO", "http://purl.obolibrary.org/obo/PR_%u");
    Assert.assertEquals("http://purl.obolibrary.org/obo/PR_000028527", resolver.resolve(xref));
}

Example 78 with DbXref

use of org.nextprot.api.core.domain.DbXref in project nextprot-api by calipho-sib.

the class OboLibraryXrefURLResolverTest method testResolveCLO.

@Test
public void testResolveCLO() throws Exception {
    DbXref xref = DbXrefURLResolverDelegateTest.createDbXref("CLO:0000031", "CLO", "purl.obolibrary.org/obo/%s");
    Assert.assertEquals("http://purl.obolibrary.org/obo/CLO_0000031", resolver.resolve(xref));
}

Example 79 with DbXref

use of org.nextprot.api.core.domain.DbXref in project nextprot-api by calipho-sib.

the class PirXrefURLResolverTest method testResolvePIRWithoutURLProtocol.

// entry/NX_P51610/xref.json
@Test
public void testResolvePIRWithoutURLProtocol() throws Exception {
    DbXref xref = DbXrefURLResolverDelegateTest.createDbXref("babebibobu", "PIR", "pir.georgetown.edu/cgi-bin/nbrfget?uid=%s");
    xref.setProperties(Collections.singletonList(DbXrefURLResolverDelegateTest.createDbXrefProperty("entry name", "A40718")));
    Assert.assertEquals("http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A40718", resolver.resolve(xref));
}

Example 80 with DbXref

use of org.nextprot.api.core.domain.DbXref in project nextprot-api by calipho-sib.

the class PirXrefURLResolverTest method testResolvePIRShouldNotThrowsNPE.

@Test(expected = UnresolvedXrefURLException.class)
public void testResolvePIRShouldNotThrowsNPE() throws Exception {
    DbXref xref = DbXrefURLResolverDelegateTest.createDbXref("babebibobu", "PIR", "pir.georgetown.edu/cgi-bin/nbrfget?uid=%s");
    Assert.assertEquals("http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A40718", resolver.resolve(xref));
}