Examples with DbXref org.nextprot.api.core.domain.DbXref used on opensource projects

Example 81 with DbXref

use of org.nextprot.api.core.domain.DbXref in project nextprot-api by calipho-sib.

the class UnigeneXrefURLResolverTest method testResolveUniGene.

@Test
public void testResolveUniGene() throws Exception {
    DbXref xref = DbXrefURLResolverDelegateTest.createDbXref("Hs.83634", "UniGene", "http://www.ncbi.nlm.nih.gov/UniGene/clust.cgi?ORG=%d&CID=%s");
    Assert.assertEquals("http://www.ncbi.nlm.nih.gov/UniGene/clust.cgi?ORG=Hs&CID=83634", resolver.resolve(xref));
}

Example 82 with DbXref

use of org.nextprot.api.core.domain.DbXref in project nextprot-api by calipho-sib.

the class ClinvarXrefURLResolverTest method testResolveClinvar.

@Test
public void testResolveClinvar() throws Exception {
    DbXref xref = DbXrefURLResolverDelegateTest.createDbXref("HCFC1", "Clinvar", "url.whatever");
    Assert.assertEquals("http://www.ncbi.nlm.nih.gov/clinvar/?term=HCFC1", resolver.resolve(xref));
}

Example 83 with DbXref

use of org.nextprot.api.core.domain.DbXref in project nextprot-api by calipho-sib.

the class ConstantXrefDatabasebURLResolverTest method testResolvePrositeProRuleDbURL.

@Test
public void testResolvePrositeProRuleDbURL() throws Exception {
    DefaultDbXrefURLResolver resolver = new ConstantXrefDatabasebURLResolver("http://prosite.expasy.org/");
    DbXref xref = DbXrefURLResolverDelegateTest.createDbXref("PRU00156", "PROSITE-ProRule", "https://prosite.expasy.org/");
    Assert.assertEquals("http://prosite.expasy.org/", resolver.getValidXrefURL(xref.getUrl(), "PROSITE-ProRule"));
}

Example 84 with DbXref

use of org.nextprot.api.core.domain.DbXref in project nextprot-api by calipho-sib.

the class DbXrefURLResolverDelegateTest method testResolvePIRShouldThrowsException.

@Test(expected = UnresolvedXrefURLException.class)
public void testResolvePIRShouldThrowsException() throws Exception {
    DbXref xref = createDbXref("babebibobu", "PIR", "pir.georgetown.edu/cgi-bin/nbrfget?uid=%s");
    Assert.assertEquals("http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A40718", resolver.resolve(xref));
}

Example 85 with DbXref

use of org.nextprot.api.core.domain.DbXref in project nextprot-api by calipho-sib.

the class DbXrefURLResolverDelegateTest method testResolveTKG.

@Test
public void testResolveTKG() throws Exception {
    DbXref xref = createDbXref("0377", "TKG", "http://www2.idac.tohoku.ac.jp/dep/ccr/TKGdate/TKGvo10%n/%s.html");
    Assert.assertEquals("http://www2.idac.tohoku.ac.jp/dep/ccr/TKGdate/TKGvo103/0377.html", resolver.resolve(xref));
    Assert.assertEquals("http://www2.idac.tohoku.ac.jp/dep/ccr/TKGdate/TKGvo10%n/%s.html", xref.getLinkUrl());
}