Examples with EntityNameClass org.nextprot.api.core.domain.Overview.EntityNameClass used on opensource projects

Example 1 with EntityNameClass

use of org.nextprot.api.core.domain.Overview.EntityNameClass in project nextprot-api by calipho-sib.

the class OverviewServiceImpl method setNamesInOverview.

private void setNamesInOverview(List<EntityName> entityNames, Overview overview) {
    Map<String, EntityName> entityMap = Maps.uniqueIndex(entityNames, EntityName::getId);
    Map<String, EntityName> mutableEntityMap = Maps.newHashMap(entityMap);
    String parentId;
    for (EntityName entityName : entityMap.values()) {
        parentId = entityName.getParentId();
        if (parentId != null && mutableEntityMap.containsKey(parentId)) {
            if (entityName.isMain()) {
                mutableEntityMap.get(parentId).addOtherRecommendedEntityName(entityName);
            } else {
                mutableEntityMap.get(parentId).addSynonym(entityName);
            }
        } else {
            mutableEntityMap.put(entityName.getId(), entityName);
        }
    }
    List<EntityName> mutableEntityNames = new ArrayList<>(mutableEntityMap.values());
    for (EntityName entityName : mutableEntityMap.values()) if (entityName.getParentId() != null)
        mutableEntityNames.remove(entityName);
    Multimap<Overview.EntityNameClass, EntityName> entryNameMap = Multimaps.index(mutableEntityNames, EntityName::getClazz);
    for (EntityNameClass en : entryNameMap.keySet()) {
        switch(en) {
            case PROTEIN_NAMES:
                {
                    overview.setProteinNames(getSortedList(entryNameMap, en));
                    break;
                }
            case GENE_NAMES:
                {
                    overview.setGeneNames(getSortedList(entryNameMap, en, Comparator.comparing(EntityName::getName)));
                    break;
                }
            case CLEAVED_REGION_NAMES:
                {
                    overview.setCleavedRegionNames(getSortedList(entryNameMap, en));
                    break;
                }
            case ADDITIONAL_NAMES:
                {
                    overview.setAdditionalNames(getSortedList(entryNameMap, en));
                    break;
                }
            case FUNCTIONAL_REGION_NAMES:
                {
                    overview.setFunctionalRegionNames(getSortedList(entryNameMap, en));
                    break;
                }
        }
    }
}