Examples with AnnotationEvidence org.nextprot.api.core.domain.annotation.AnnotationEvidence used on opensource projects

Example 26 with AnnotationEvidence

use of org.nextprot.api.core.domain.annotation.AnnotationEvidence in project nextprot-api by calipho-sib.

the class AnnotationTest method testNegativeAndPositive.

/*
	 * at least one detected, low, high or medium => detected !
     */
@Test
public void testNegativeAndPositive() {
    Annotation a = new Annotation();
    List<AnnotationEvidence> evidences = new ArrayList<>();
    evidences.add(buildEvidence("negative"));
    evidences.add(buildEvidence("positive"));
    a.setEvidences(evidences);
    Assert.assertTrue(a.isExpressionLevelDetected().isPresent());
    Assert.assertTrue(a.isExpressionLevelDetected().get());
}

Example 27 with AnnotationEvidence

use of org.nextprot.api.core.domain.annotation.AnnotationEvidence in project nextprot-api by calipho-sib.

the class AnnotationTest method testOneNotDetected.

@Test
public void testOneNotDetected() {
    Annotation a = new Annotation();
    List<AnnotationEvidence> evidences = new ArrayList<>();
    evidences.add(buildEvidence("not detected"));
    a.setEvidences(evidences);
    Assert.assertTrue(a.isExpressionLevelDetected().isPresent());
    Assert.assertTrue(!a.isExpressionLevelDetected().get());
}

Example 28 with AnnotationEvidence

use of org.nextprot.api.core.domain.annotation.AnnotationEvidence in project nextprot-api by calipho-sib.

the class AnnotationTest method testNotDetectedAndPositive.

/*
	 * at least one detected, low, high or medium => detected !
	 */
@Test
public void testNotDetectedAndPositive() {
    Annotation a = new Annotation();
    List<AnnotationEvidence> evidences = new ArrayList<>();
    evidences.add(buildEvidence("not detected"));
    evidences.add(buildEvidence("positive"));
    a.setEvidences(evidences);
    Assert.assertTrue(a.isExpressionLevelDetected().isPresent());
    Assert.assertTrue(a.isExpressionLevelDetected().get());
}

Example 29 with AnnotationEvidence

use of org.nextprot.api.core.domain.annotation.AnnotationEvidence in project nextprot-api by calipho-sib.

the class AnnotationTest method testHighAndPositive.

@Test
public void testHighAndPositive() {
    Annotation a = new Annotation();
    List<AnnotationEvidence> evidences = new ArrayList<>();
    evidences.add(buildEvidence("high"));
    evidences.add(buildEvidence("positive"));
    a.setEvidences(evidences);
    Assert.assertTrue(a.isExpressionLevelDetected().isPresent());
    Assert.assertTrue(a.isExpressionLevelDetected().get());
}

Example 30 with AnnotationEvidence

use of org.nextprot.api.core.domain.annotation.AnnotationEvidence in project nextprot-api by calipho-sib.

the class AnnotationTest method testNoExpressionLevel.

/*
	 * occurs for every annotation not being a :ExpressionProfile
	 */
@Test
public void testNoExpressionLevel() {
    Annotation a = new Annotation();
    List<AnnotationEvidence> evidences = new ArrayList<>();
    evidences.add(new AnnotationEvidence());
    a.setEvidences(evidences);
    Assert.assertTrue(!a.isExpressionLevelDetected().isPresent());
}