Examples with PublicationService org.nextprot.api.core.service.PublicationService used on opensource projects

Example 1 with PublicationService

use of org.nextprot.api.core.service.PublicationService in project nextprot-api by calipho-sib.

the class GenerateSolrPublicationIndex method start.

@Override
public void start(String[] args) {
    PublicationService publicationService = getBean(PublicationService.class);
    int pubcnt = 0;
    String solrServer = System.getProperty("solr.server");
    NPreconditions.checkNotNull(solrServer, "Please set solr.server variable. For example: java -Dsolr.server=http://localhost:8983/solr/nppublications1");
    logger.info("Solr server: " + solrServer);
    SolrIndexer<Publication> indexer = new PublicationSolrindexer(solrServer, publicationService);
    // Remove previous indexes
    logger.info("removing all solr publication records");
    indexer.clearDatabase("");
    List<Long> allpubids;
    logger.info("getting all publications from API");
    long start = System.currentTimeMillis();
    allpubids = publicationService.findAllPublicationIds();
    logger.info("indexing " + allpubids.size() + " publications...");
    for (Long id : allpubids) {
        Publication currpub = publicationService.findPublicationById(id);
        if (currpub.getPublicationType().equals(PublicationType.ARTICLE)) {
            indexer.add(currpub);
            pubcnt++;
        }
        if ((pubcnt % 5000) == 0)
            logger.info(pubcnt + "/" + allpubids.size() + " publications done");
    }
    indexer.addRemaing();
    logger.info("comitting");
    indexer.commit();
    logger.info(pubcnt + " publications indexed in " + (System.currentTimeMillis() - start) / 1000 + " seconds...END");
}