Examples with SequenceVariant org.nextprot.api.isoform.mapper.domain.impl.SequenceVariant used on opensource projects

Example 1 with SequenceVariant

use of org.nextprot.api.isoform.mapper.domain.impl.SequenceVariant in project nextprot-api by calipho-sib.

the class StatementTranformerServiceImpl method getIsoAccession.

private String getIsoAccession(String featureName, String entryAccession) {
    SequenceVariant sv;
    try {
        sv = new SequenceVariant(featureName);
    } catch (ParseException e) {
        throw new NextProtException(e);
    }
    List<Isoform> isoforms = isoformService.findIsoformsByEntryName(entryAccession);
    Isoform isoSpecific = IsoformUtils.getIsoformByName(isoforms, sv.getIsoformName());
    return isoSpecific.getIsoformAccession();
}