Examples with CvTermSolrIndexer org.nextprot.api.tasks.solr.indexer.CvTermSolrIndexer used on opensource projects

Example 1 with CvTermSolrIndexer

use of org.nextprot.api.tasks.solr.indexer.CvTermSolrIndexer in project nextprot-api by calipho-sib.

the class GenerateSolrTerminologyIndex method start.

@Override
public void start(String[] args) {
    TerminologyService terminologyService = getBean(TerminologyService.class);
    int termcnt = 0;
    String solrServer = System.getProperty("solr.server");
    NPreconditions.checkNotNull(solrServer, "Please set solr.server variable. For example: java -Dsolr.server=\"http://localhost:8983/solr/npcvs1\"");
    logger.info("Solr server: " + solrServer);
    // eg: java -Dsolr.ontology="UniprotFamilyCv" (don't forget CamelCasing)
    String ontologyToReindex = System.getProperty("solr.ontology");
    SolrIndexer<CvTerm> indexer = new CvTermSolrIndexer(solrServer);
    List<CvTerm> allterms;
    if (ontologyToReindex == null) {
        // No arg: index all ontologies
        System.err.println("indexing: all ontologies");
        logger.info("indexing all terminologies");
        indexer.clearDatabase("");
        allterms = terminologyService.findAllCVTerms();
    } else {
        // Index ontology given as VM argument
        System.err.println("indexing: " + ontologyToReindex);
        logger.info("indexing terminology: " + ontologyToReindex);
        indexer.clearDatabase("filters:" + ontologyToReindex);
        allterms = terminologyService.findCvTermsByOntology(ontologyToReindex);
    }
    for (CvTerm term : allterms) {
        indexer.add(term);
        termcnt++;
        if ((termcnt % 3000) == 0)
            logger.info(termcnt + "/" + allterms.size() + " cv terms done");
    }
    indexer.addRemaing();
    logger.info("comitting");
    indexer.commit();
    logger.info(termcnt + " terms indexed...END");
}