Examples with GlClient org.nmdp.gl.client.GlClient used on opensource projects

Example 1 with GlClient

use of org.nmdp.gl.client.GlClient in project ImmunogeneticDataTools by nmdp-bioinformatics.

the class GLStringUtilities method convertToMug.

public static MultilocusUnphasedGenotype convertToMug(String glString) {
    MultilocusUnphasedGenotype mug = null;
    try {
        // TODO: should use strict but example GL Strings are missing intron
        // variants in some cases (HLA-DQB1*02:02)
        // GlClient glClient = LocalGlClient.createStrict();
        GlClient glClient = LocalGlClient.create();
        mug = glClient.createMultilocusUnphasedGenotype(glString);
    } catch (GlClientException e) {
        LOGGER.severe("Couldn't convert GLString to MultiLocusUnphasedGenotype");
        e.printStackTrace();
    }
    return mug;
}