Examples with Dataset org.obiba.mica.dataset.domain.Dataset used on opensource projects

Example 16 with Dataset

use of org.obiba.mica.dataset.domain.Dataset in project mica2 by obiba.

the class DraftCollectedDatasetResource method update.

@PUT
public Response update(Mica.DatasetDto datasetDto, @Context UriInfo uriInfo, @Nullable @QueryParam("comment") String comment) {
    checkPermission("/draft/collected-dataset", "EDIT");
    if (!datasetDto.hasId() || !datasetDto.getId().equals(id))
        throw new IllegalArgumentException("Not the expected dataset id");
    Dataset dataset = dtos.fromDto(datasetDto);
    if (!(dataset instanceof StudyDataset))
        throw new IllegalArgumentException("A study dataset is expected");
    datasetService.save((StudyDataset) dataset, comment);
    return Response.noContent().build();
}

Example 17 with Dataset

use of org.obiba.mica.dataset.domain.Dataset in project mica2 by obiba.

the class DatasetController method getDataset.

private Dataset getDataset(String id, String shareKey) {
    Dataset dataset;
    if (Strings.isNullOrEmpty(shareKey)) {
        dataset = publishedDatasetService.findById(id);
        if (dataset == null)
            throw NoSuchDatasetException.withId(id);
        checkAccess((dataset instanceof StudyDataset) ? "/collected-dataset" : "/harmonized-dataset", id);
    } else {
        try {
            dataset = draftCollectedDatasetService.findById(id);
            checkPermission("/draft/collected-dataset", "VIEW", id, shareKey);
        } catch (NoSuchDatasetException ex) {
            dataset = draftHarmonizedDatasetService.findById(id);
            checkPermission("/draft/harmonized-dataset", "VIEW", id, shareKey);
        }
    }
    return dataset;
}

Example 18 with Dataset

use of org.obiba.mica.dataset.domain.Dataset in project mica2 by obiba.

the class DatasetAnalysisController method getDataset.

private Dataset getDataset(String id) {
    Dataset dataset = publishedDatasetService.findById(id);
    if (dataset == null)
        throw NoSuchDatasetException.withId(id);
    checkAccess((dataset instanceof StudyDataset) ? "/collected-dataset" : "/harmonized-dataset", id);
    return dataset;
}