Examples with DatasetVariable org.obiba.mica.dataset.domain.DatasetVariable used on opensource projects

Example 11 with DatasetVariable

use of org.obiba.mica.dataset.domain.DatasetVariable in project mica2 by obiba.

the class PublishedCollectedDatasetVariableResource method getContingencyVariables.

private Pair<DatasetVariable, DatasetVariable> getContingencyVariables(String crossVariable) {
    if (Strings.isNullOrEmpty(crossVariable))
        throw new BadRequestException("Cross variable name is required for the contingency table");
    DatasetVariable var = getDatasetVariable(datasetId, variableName, DatasetVariable.Type.Collected, null);
    DatasetVariable crossVar = getDatasetVariable(datasetId, crossVariable, DatasetVariable.Type.Collected, null);
    return Pair.create(var, crossVar);
}

Example 12 with DatasetVariable

use of org.obiba.mica.dataset.domain.DatasetVariable in project mica2 by obiba.

the class PublishedDataschemaDatasetVariableResource method getContingencyCsv.

@GET
@Path("/contingency/_export")
@Produces("text/csv")
@Timed
public Response getContingencyCsv(@QueryParam("by") String crossVariable) throws IOException {
    Pair<DatasetVariable, DatasetVariable> variables = getContingencyVariables(crossVariable);
    ByteArrayOutputStream value = new CsvContingencyWriter(variables.getFirst(), variables.getSecond()).write(getDatasetVariableContingenciesDto(variables.getFirst(), variables.getSecond()));
    return Response.ok(value.toByteArray()).header("Content-Disposition", String.format("attachment; filename=\"contingency-table-%s-%s.csv\"", variableName, crossVariable)).build();
}

Example 13 with DatasetVariable

use of org.obiba.mica.dataset.domain.DatasetVariable in project mica2 by obiba.

the class PublishedDataschemaDatasetVariableResource method getContingencyVariables.

private Pair<DatasetVariable, DatasetVariable> getContingencyVariables(String crossVariable) {
    if (Strings.isNullOrEmpty(crossVariable))
        throw new BadRequestException("Cross variable name is required for the contingency table");
    DatasetVariable var = getDatasetVariable(datasetId, variableName, DatasetVariable.Type.Dataschema, null);
    DatasetVariable crossVar = getDatasetVariable(datasetId, crossVariable, DatasetVariable.Type.Dataschema, null);
    return Pair.create(var, crossVar);
}

Example 14 with DatasetVariable

use of org.obiba.mica.dataset.domain.DatasetVariable in project mica2 by obiba.

the class PublishedHarmonizedDatasetVariableResource method getContingencyCsv.

@GET
@Path("/contingency/_export")
@Produces("text/csv")
@Timed
public Response getContingencyCsv(@QueryParam("by") String crossVariable) throws IOException {
    Pair<DatasetVariable, DatasetVariable> variables = getContingencyVariables(crossVariable);
    ByteArrayOutputStream res = new CsvContingencyWriter(variables.getFirst(), variables.getSecond()).write(getContingencyDto(variables.getFirst(), variables.getSecond()));
    return Response.ok(res.toByteArray()).header("Content-Disposition", String.format("attachment; filename=\"contingency-table-%s-%s.csv\"", variableName, crossVariable)).build();
}

Example 15 with DatasetVariable

use of org.obiba.mica.dataset.domain.DatasetVariable in project mica2 by obiba.

the class PublishedHarmonizedDatasetVariableResource method getContingencyVariables.

private Pair<DatasetVariable, DatasetVariable> getContingencyVariables(String crossVariable) {
    if (Strings.isNullOrEmpty(crossVariable))
        throw new BadRequestException("Cross variable name is required for the contingency table");
    DatasetVariable var = getDatasetVariable(datasetId, variableName, DatasetVariable.Type.Harmonized, studyId, project, table, tableType);
    DatasetVariable crossVar = getDatasetVariable(datasetId, crossVariable, DatasetVariable.Type.Harmonized, studyId, project, table, tableType);
    return Pair.create(var, crossVar);
}