Examples with DatasetVariable org.obiba.mica.dataset.domain.DatasetVariable used on opensource projects

Example 16 with DatasetVariable

use of org.obiba.mica.dataset.domain.DatasetVariable in project mica2 by obiba.

the class PublishedHarmonizedDatasetVariableResource method getContingencyExcel.

@GET
@Path("/contingency/_export")
@Produces("application/vnd.openxmlformats-officedocument.spreadsheetml.sheet")
@Timed
public Response getContingencyExcel(@QueryParam("by") String crossVariable) throws IOException {
    Pair<DatasetVariable, DatasetVariable> variables = getContingencyVariables(crossVariable);
    ByteArrayOutputStream res = new ExcelContingencyWriter(variables.getFirst(), variables.getSecond()).write(getContingencyDto(variables.getFirst(), variables.getSecond()));
    return Response.ok(res.toByteArray()).header("Content-Disposition", String.format("attachment; filename=\"contingency-table-%s-%s.xlsx\"", variableName, crossVariable)).build();
}

Example 17 with DatasetVariable

use of org.obiba.mica.dataset.domain.DatasetVariable in project mica2 by obiba.

the class VariableQuery method processHits.

@Override
protected void processHits(MicaSearch.QueryResultDto.Builder builder, Searcher.DocumentResults results, QueryScope scope, CountStatsData counts) throws IOException {
    MicaSearch.DatasetVariableResultDto.Builder resBuilder = MicaSearch.DatasetVariableResultDto.newBuilder();
    Map<String, BaseStudy> studyMap = Maps.newHashMap();
    Map<String, Network> networkMap = Maps.newHashMap();
    for (Searcher.DocumentResult result : results.getDocuments()) {
        if (result.hasSource()) {
            DatasetVariable.IdResolver resolver = DatasetVariable.IdResolver.from(result.getId());
            DatasetVariable variable = objectMapper.readValue(result.getSourceInputStream(), DatasetVariable.class);
            resBuilder.addSummaries(processHit(resolver, variable, studyMap, networkMap));
        }
    }
    builder.setExtension(MicaSearch.DatasetVariableResultDto.result, resBuilder.build());
}