Examples with CannotFixXMLException org.opendatakit.briefcase.model.CannotFixXMLException used on opensource projects

Example 1 with CannotFixXMLException

use of org.opendatakit.briefcase.model.CannotFixXMLException in project briefcase by opendatakit.

the class BadXMLFixer method fixBadXML.

public static Document fixBadXML(File xmlFile) throws CannotFixXMLException {
    log.info("Trying to fix the submission {} ", xmlFile.getAbsolutePath());
    try {
        String originalXML = FileUtils.readFileToString(xmlFile, ENCODING);
        String fixedXML = fixXML(originalXML);
        File tempFile = File.createTempFile(xmlFile.getName(), ".fixed.xml");
        FileUtils.writeStringToFile(tempFile, fixedXML, ENCODING);
        return XmlManipulationUtils.parseXml(tempFile);
    } catch (IOException | ParsingException | FileSystemException e) {
        log.error("Cannot fix xml", e);
        throw new CannotFixXMLException("Cannot fix xml", e);
    }
}

Example 2 with CannotFixXMLException

use of org.opendatakit.briefcase.model.CannotFixXMLException in project briefcase by opendatakit.

the class XmlManipulationUtils method parseXml.

public static Document parseXml(File submission) throws ParsingException, FileSystemException {
    // parse the xml document...
    Document doc = null;
    try {
        InputStream is = null;
        InputStreamReader isr = null;
        try {
            is = new FileInputStream(submission);
            isr = new InputStreamReader(is, UTF_8);
            Document tempDoc = new Document();
            KXmlParser parser = new KXmlParser();
            parser.setInput(isr);
            parser.setFeature(XmlPullParser.FEATURE_PROCESS_NAMESPACES, true);
            tempDoc.parse(parser);
            isr.close();
            doc = tempDoc;
        } finally {
            if (isr != null) {
                try {
                    isr.close();
                } catch (Exception e) {
                // no-op
                }
            }
            if (is != null) {
                try {
                    is.close();
                } catch (Exception e) {
                // no-op
                }
            }
        }
    } catch (XmlPullParserException e) {
        try {
            return BadXMLFixer.fixBadXML(submission);
        } catch (CannotFixXMLException e1) {
            File debugFileLocation = new File(new StorageLocation().getBriefcaseFolder(), "debug");
            try {
                if (!debugFileLocation.exists()) {
                    FileUtils.forceMkdir(debugFileLocation);
                }
                long checksum = FileUtils.checksumCRC32(submission);
                File debugFile = new File(debugFileLocation, "submission-" + checksum + ".xml");
                FileUtils.copyFile(submission, debugFile);
            } catch (IOException e2) {
                throw new RuntimeException(e2);
            }
            throw new ParsingException("Failed during parsing of submission Xml: " + e.toString());
        }
    } catch (IOException e) {
        throw new FileSystemException("Failed while reading submission xml: " + e.toString());
    }
    return doc;
}

Example 3 with CannotFixXMLException

use of org.opendatakit.briefcase.model.CannotFixXMLException in project briefcase by opendatakit.

the class BadXMLFixer method fixXML.

protected static String fixXML(String originalXML) throws CannotFixXMLException {
    // try to find the name of the root element, that is the formId
    int startIndex = XML_HEADER.length() + 1;
    int endIndex = originalXML.indexOf(" ", startIndex);
    String formId = originalXML.substring(startIndex, endIndex);
    log.warn("Trying to fix a submission of the form: " + formId);
    // try to see if the last part is a part of the form id
    int idClosingTagIndex = originalXML.lastIndexOf("</");
    if (idClosingTagIndex == -1) {
        throw new CannotFixXMLException("Cannot find a single closing tag in this file!");
    }
    String lastPart = originalXML.substring(idClosingTagIndex + 2);
    if (lastPart.equals("") || (formId + ">").startsWith(lastPart)) {
        // this is the easy case just fill in the rest of the id.
        return originalXML.substring(0, idClosingTagIndex) + "</" + formId + ">";
    } else if (("meta></" + formId + ">").startsWith(lastPart)) {
        // that means that perhaps the entire closing tag is missing, let's give it a try
        return originalXML.substring(0, idClosingTagIndex) + "</meta></" + formId + ">";
    } else {
        throw new CannotFixXMLException("Cannot understand where this file was truncated");
    }
}