Examples with CollectTaxonomy org.openforis.collect.model.CollectTaxonomy used on opensource projects

Example 6 with CollectTaxonomy

use of org.openforis.collect.model.CollectTaxonomy in project collect by openforis.

the class SpeciesService method findByVernacularName.

@Secured("ROLE_ENTRY")
public List<TaxonOccurrenceProxy> findByVernacularName(String taxonomyName, int nodeId, String searchString, int maxResults, TaxonSearchParameters parameters) {
    CollectTaxonomy taxonomy = loadTaxonomyByActiveSurvey(taxonomyName);
    CollectRecord activeRecord = sessionManager.getActiveRecord();
    Node<? extends NodeDefinition> attr = activeRecord.getNodeByInternalId(nodeId);
    if (attr instanceof TaxonAttribute) {
        List<TaxonOccurrence> list = speciesManager.findByVernacularName(taxonomy, (TaxonAttribute) attr, searchString, maxResults, parameters);
        return Proxies.fromList(list, TaxonOccurrenceProxy.class);
    } else {
        throw new IllegalArgumentException("TaxonAttribute expected, found: " + attr.getClass().getName());
    }
}

Example 7 with CollectTaxonomy

use of org.openforis.collect.model.CollectTaxonomy in project collect by openforis.

the class SpeciesService method deleteTaxonomy.

@Secured("ROLE_ADMIN")
public void deleteTaxonomy(TaxonomyProxy proxy) {
    CollectSurvey survey = sessionManager.getActiveDesignerSurvey();
    Integer taxonomyId = proxy.getId();
    CollectTaxonomy taxonomy = speciesManager.loadTaxonomyById(survey, taxonomyId);
    speciesManager.delete(taxonomy);
    deleteReferencingAttributes(taxonomy);
}

Example 8 with CollectTaxonomy

use of org.openforis.collect.model.CollectTaxonomy in project collect by openforis.

the class SurveyBackupJob method addSpeciesExportTask.

private void addSpeciesExportTask() {
    List<CollectTaxonomy> taxonomies = speciesManager.loadTaxonomiesBySurvey(survey);
    for (CollectTaxonomy taxonomy : taxonomies) {
        // if ( speciesManager.hasTaxons(taxonomy.getId()) ) {
        SpeciesBackupExportTask task = createTask(SpeciesBackupExportTask.class);
        task.setSpeciesManager(speciesManager);
        task.setOutputStream(zipOutputStream);
        task.setSurvey(survey);
        task.setTaxonomyId(taxonomy.getId());
        String entryName = String.format(SPECIES_ENTRY_FORMAT, taxonomy.getName());
        task.addStatusChangeListener(new ZipEntryCreatorTaskStatusChangeListener(zipOutputStream, entryName));
        addTask(task);
    // }
    }
}

Example 9 with CollectTaxonomy

use of org.openforis.collect.model.CollectTaxonomy in project collect by openforis.

the class SpeciesBackupImportJobIntegrationTest method importCSVFile.

private SpeciesBackupImportJob importCSVFile(String fileName) throws Exception {
    File file = getTestFile(fileName);
    CollectTaxonomy taxonomy = new CollectTaxonomy();
    taxonomy.setSurvey(survey);
    taxonomy.setName(TEST_TAXONOMY_NAME);
    speciesManager.save(taxonomy);
    SpeciesBackupImportJob job = jobManager.createJob(SpeciesBackupImportJob.class);
    job.setFile(file);
    job.setSurvey(survey);
    job.setTaxonomyName(TEST_TAXONOMY_NAME);
    jobManager.start(job, false);
    return job;
}

Example 10 with CollectTaxonomy

use of org.openforis.collect.model.CollectTaxonomy in project collect by openforis.

the class SpeciesBackupImportJobIntegrationTest method testExport.

@Test
public void testExport() throws Exception {
    SpeciesBackupImportJob job = importCSVFile(VALID_TEST_CSV);
    assertTrue(job.isCompleted());
    CollectTaxonomy taxonomy = taxonomyDao.loadByName(survey, TEST_TAXONOMY_NAME);
    TaxonSummaries summaries = speciesManager.loadFullTaxonSummariesOld(taxonomy);
    assertNotNull(summaries);
}