Examples with ConceptDescription org.openmrs.ConceptDescription used on opensource projects

Example 21 with ConceptDescription

use of org.openmrs.ConceptDescription in project openmrs-core by openmrs.

the class ConceptServiceTest method saveConcept_shouldCreateNewConceptInDatabase.

@Test
public void saveConcept_shouldCreateNewConceptInDatabase() {
    executeDataSet(INITIAL_CONCEPTS_XML);
    Concept conceptToAdd = new Concept();
    ConceptName cn = new ConceptName("new name", Context.getLocale());
    conceptToAdd.addName(cn);
    conceptToAdd.addDescription(new ConceptDescription("some description", null));
    conceptToAdd.setDatatype(new ConceptDatatype(1));
    conceptToAdd.setConceptClass(new ConceptClass(1));
    assertFalse(conceptService.getAllConcepts().contains(conceptToAdd));
    conceptService.saveConcept(conceptToAdd);
    assertTrue(conceptService.getAllConcepts().contains(conceptToAdd));
}

Example 22 with ConceptDescription

use of org.openmrs.ConceptDescription in project openmrs-core by openmrs.

the class ConceptServiceTest method saveConcept_shouldSetAuditInfoIfAnItemIsAddedToAnyOfItsChildCollections.

/**
 * @see ConceptService#saveConcept(Concept)
 */
@Test
public void saveConcept_shouldSetAuditInfoIfAnItemIsAddedToAnyOfItsChildCollections() {
    Concept concept = conceptService.getConcept(3);
    Assert.assertNull(concept.getDateChanged());
    Assert.assertNull(concept.getChangedBy());
    ConceptDescription description = new ConceptDescription("new description", Context.getLocale());
    concept.addDescription(description);
    conceptService.saveConcept(concept);
    Assert.assertNotNull(description.getConceptDescriptionId());
    Assert.assertNotNull(concept.getDateChanged());
    Assert.assertNotNull(concept.getChangedBy());
}

Example 23 with ConceptDescription

use of org.openmrs.ConceptDescription in project openmrs-module-pihcore by PIH.

the class ConceptDictionaryExportTest method exportData.

/**
 * Intentional issues currently with this, in order to isolate away known issues.  These should be removed as appropriate:
 * - Normalizes concept source name, due to known issue needed in OCL to facilitate source matching
 * - Excludes voided concept names (which are really retired names that may have references), as these are not provided by ocl
 * - Converts answer sort weight from null -> 1.0 if only one answer exists for the concept
 */
@Test
public void exportData() throws Exception {
    // Only run this test if it is being run alone.  This ensures this test will not run in normal build.
    if (props == null) {
        return;
    }
    if (!Context.isSessionOpen()) {
        Context.openSession();
    }
    authenticate();
    List<Map<String, Object>> concepts = new ArrayList<>();
    System.out.println("Pulling concepts");
    int i = 0;
    List<Concept> conceptList = Context.getConceptService().getAllConcepts();
    conceptList.sort(Comparator.comparing(t -> t.getUuid().toUpperCase()));
    List<Concept> conceptsToIgnore = getConceptsToIgnore();
    conceptList.removeAll(conceptsToIgnore);
    for (Concept concept : conceptList) {
        System.out.println(i++ + ": Pulling concept: " + concept.getUuid());
        Map<String, Object> c = new LinkedHashMap<>();
        concepts.add(c);
        c.put("uuid", concept.getUuid());
        c.put("concept_class", concept.getConceptClass().getName());
        c.put("concept_datatype", concept.getDatatype().getName());
        c.put("is_set", BooleanUtils.isTrue(concept.getSet()) ? "true" : "false");
        c.put("version", concept.getVersion() == null ? "" : concept.getVersion());
        c.put("retired", BooleanUtils.isTrue(concept.getRetired()) ? "true" : "false");
        c.put("retireReason", concept.getRetireReason() == null ? "" : concept.getRetireReason());
        if (concept instanceof ConceptNumeric) {
            ConceptNumeric cn = (ConceptNumeric) concept;
            c.put("hi_absolute", cn.getHiAbsolute() == null ? "" : cn.getHiAbsolute().toString());
            c.put("hi_critical", cn.getLowAbsolute() == null ? "" : cn.getLowAbsolute().toString());
            c.put("hi_normal", cn.getHiNormal() == null ? "" : cn.getHiNormal().toString());
            c.put("low_absolute", cn.getLowAbsolute() == null ? "" : cn.getLowAbsolute().toString());
            c.put("low_critical", cn.getLowCritical() == null ? "" : cn.getLowCritical().toString());
            c.put("low_normal", cn.getLowNormal() == null ? "" : cn.getLowNormal().toString());
            c.put("units", cn.getUnits() == null ? "" : cn.getUnits());
            c.put("allow_decimal", BooleanUtils.isTrue(cn.getAllowDecimal()) ? "true" : "false");
            c.put("display_precision", cn.getHiAbsolute() == null ? "" : cn.getHiAbsolute().toString());
        }
        if (concept instanceof ConceptComplex) {
            ConceptComplex cc = (ConceptComplex) concept;
            c.put("handler", cc.getHandler());
        }
        List<ConceptName> names = new ArrayList<>(concept.getNames(true));
        names.sort(Comparator.comparing(ConceptName::getName).thenComparing(cn -> cn.getConceptNameType() == null ? "" : cn.getConceptNameType().name()).thenComparing(cn -> cn.getLocale().toString()).thenComparing(ConceptName::getLocalePreferred));
        List<Map<String, Object>> nameList = new ArrayList<>();
        for (ConceptName name : names) {
            if (BooleanUtils.isNotTrue(name.getVoided())) {
                Map<String, Object> n = new LinkedHashMap<>();
                n.put("name", name.getName());
                n.put("locale", name.getLocale().toString());
                n.put("locale_preferred", BooleanUtils.isTrue(name.getLocalePreferred()) ? "true" : "false");
                n.put("type", name.getConceptNameType() == null ? "" : name.getConceptNameType().name());
                n.put("voided", BooleanUtils.isTrue(name.getVoided()) ? "true" : "false");
                nameList.add(n);
            }
        }
        c.put("names", nameList);
        List<ConceptDescription> descriptions = new ArrayList<>(concept.getDescriptions());
        descriptions.sort(Comparator.comparing(ConceptDescription::getDescription));
        List<Map<String, Object>> descriptionList = new ArrayList<>();
        for (ConceptDescription description : descriptions) {
            Map<String, Object> n = new LinkedHashMap<>();
            n.put("description", description.getDescription());
            n.put("locale", description.getLocale().toString());
            descriptionList.add(n);
        }
        c.put("descriptions", descriptionList);
        List<ConceptAnswer> answers = new ArrayList<>(concept.getAnswers(true));
        answers.sort(Comparator.comparingDouble(ConceptAnswer::getSortWeight).thenComparing(ca -> ca.getAnswerConcept().getUuid()));
        List<Map<String, Object>> answerList = new ArrayList<>();
        for (ConceptAnswer ca : answers) {
            if (!conceptsToIgnore.contains(ca.getAnswerConcept())) {
                Map<String, Object> n = new LinkedHashMap<>();
                n.put("answerConcept", ca.getAnswerConcept().getUuid());
                n.put("sortWeight", ca.getSortWeight() == null ? (answers.size() == 1 ? "1.0" : "") : ca.getSortWeight().toString());
                answerList.add(n);
            }
        }
        c.put("answers", answerList);
        List<ConceptSet> setMembers = new ArrayList<>(concept.getConceptSets());
        setMembers.sort(Comparator.comparingDouble(ConceptSet::getSortWeight).thenComparing(cs -> cs.getConcept().getUuid()));
        List<Map<String, Object>> setMemberList = new ArrayList<>();
        for (ConceptSet cs : setMembers) {
            if (!conceptsToIgnore.contains(cs.getConcept())) {
                Map<String, Object> n = new LinkedHashMap<>();
                n.put("concept", cs.getConcept().getUuid());
                n.put("sortWeight", cs.getSortWeight() == null ? "" : cs.getSortWeight().toString());
                setMemberList.add(n);
            }
        }
        c.put("setMembers", setMemberList);
        List<ConceptMap> mappings = new ArrayList<>(concept.getConceptMappings());
        mappings.sort(Comparator.comparing((ConceptMap m) -> m.getConceptReferenceTerm().getConceptSource().getName()).thenComparing(m -> m.getConceptMapType().getName()).thenComparing(m -> m.getConceptReferenceTerm().getCode()));
        List<Map<String, Object>> mappingList = new ArrayList<>();
        for (ConceptMap cm : mappings) {
            Map<String, Object> n = new LinkedHashMap<>();
            n.put("source", normalizeSourceName(cm.getConceptReferenceTerm().getConceptSource().getName()));
            n.put("type", cm.getConceptMapType().getName());
            n.put("code", cm.getConceptReferenceTerm().getCode());
            mappingList.add(n);
        }
        c.put("mappings", mappingList);
    }
    File exportFile = new File(EXPORT_DIR, EXPORT_FILENAME);
    System.out.println("Writing concepts to: " + exportFile);
    ObjectMapper objectMapper = new ObjectMapper();
    objectMapper.writerWithDefaultPrettyPrinter().writeValue(exportFile, concepts);
    System.out.println("Concepts exported successfully");
}

Example 24 with ConceptDescription

use of org.openmrs.ConceptDescription in project openmrs-core by openmrs.

the class ConceptServiceTest method saveConcept_shouldNotFailWhenADuplicateNameIsEditedToAUniqueValue.

/**
 * @see ConceptService#saveConcept(Concept)
 */
@Test
public void saveConcept_shouldNotFailWhenADuplicateNameIsEditedToAUniqueValue() {
    // Insert a row to simulate an existing duplicate fully specified/preferred name that needs to be edited
    executeDataSet("org/openmrs/api/include/ConceptServiceTest-conceptWithDuplicateName.xml");
    Concept conceptToEdit = conceptService.getConcept(10000);
    Locale locale = new Locale("en", "GB");
    conceptToEdit.addDescription(new ConceptDescription("some description", locale));
    ConceptName duplicateNameToEdit = conceptToEdit.getFullySpecifiedName(locale);
    // Ensure the name is a duplicate in it's locale
    Concept otherConcept = conceptService.getConcept(5497);
    Assert.assertTrue(duplicateNameToEdit.getName().equalsIgnoreCase(otherConcept.getFullySpecifiedName(locale).getName()));
    duplicateNameToEdit.setName("new unique name");
    conceptService.saveConcept(conceptToEdit);
}

Example 25 with ConceptDescription

use of org.openmrs.ConceptDescription in project openmrs-core by openmrs.

the class ConceptServiceTest method saveConcept_shouldSaveAConceptNumericAsAConcept.

/**
 * @see ConceptService#saveConcept(Concept)
 */
@Test
public void saveConcept_shouldSaveAConceptNumericAsAConcept() {
    executeDataSet(INITIAL_CONCEPTS_XML);
    // This will automatically add the given locale to the list of allowed locales
    Context.setLocale(Locale.US);
    // this tests saving a previously conceptnumeric as just a concept
    Concept c2 = new Concept(2);
    ConceptName cn = new ConceptName("not a numeric anymore", Locale.US);
    c2.addName(cn);
    c2.addDescription(new ConceptDescription("some description", null));
    c2.setDatatype(new ConceptDatatype(3));
    c2.setConceptClass(new ConceptClass(1));
    conceptService.saveConcept(c2);
    Concept secondConcept = conceptService.getConcept(2);
    // this will probably still be a ConceptNumeric object.  what to do about that?
    // revisit this problem when discriminators are in place
    // assertFalse(secondConcept instanceof ConceptNumeric);
    // this shouldn't think its a conceptnumeric object though
    assertFalse(secondConcept.isNumeric());
    assertEquals("not a numeric anymore", secondConcept.getName(Locale.US).getName());
}