Examples with PatientIdentifier org.openmrs.PatientIdentifier used on opensource projects

Example 31 with PatientIdentifier

use of org.openmrs.PatientIdentifier in project openmrs-core by openmrs.

the class PatientServiceTest method voidPatient_shouldVoidAllPatientIdentifiersAssociatedWithGivenPatient.

/**
 * @see PatientService#voidPatient(Patient,String)
 */
@Test
public void voidPatient_shouldVoidAllPatientIdentifiersAssociatedWithGivenPatient() throws Exception {
    Patient patient = Context.getPatientService().getPatient(2);
    Patient voidedPatient = Context.getPatientService().voidPatient(patient, "Void for testing");
    for (PatientIdentifier patientIdentifier : voidedPatient.getIdentifiers()) {
        Assert.assertTrue(patientIdentifier.getVoided());
        Assert.assertNotNull(patientIdentifier.getVoidedBy());
        Assert.assertNotNull(patientIdentifier.getVoidReason());
        Assert.assertNotNull(patientIdentifier.getDateVoided());
    }
}

Example 32 with PatientIdentifier

use of org.openmrs.PatientIdentifier in project openmrs-core by openmrs.

the class PatientServiceTest method checkPatientIdentifiers_shouldThrowErrorWhenPatientHasIdenticalIdentifiers.

/**
 * @see PatientService#checkPatientIdentifiers(Patient)
 */
@Test(expected = DuplicateIdentifierException.class)
public void checkPatientIdentifiers_shouldThrowErrorWhenPatientHasIdenticalIdentifiers() throws Exception {
    PatientIdentifierType patientIdentifierType = Context.getPatientService().getAllPatientIdentifierTypes(false).get(0);
    Patient patient = new Patient();
    // Identifier #1
    PatientIdentifier patientIdentifier1 = new PatientIdentifier();
    patientIdentifier1.setIdentifier("123456789");
    patientIdentifier1.setLocation(new Location(2));
    patientIdentifier1.setIdentifierType(patientIdentifierType);
    patient.addIdentifier(patientIdentifier1);
    // Identifier #2
    PatientIdentifier patientIdentifier2 = new PatientIdentifier();
    patientIdentifier2.setIdentifier("123456789");
    patientIdentifier2.setIdentifierType(patientIdentifierType);
    patientIdentifier2.setLocation(new Location(2));
    patient.addIdentifier(patientIdentifier2);
    patientService.checkPatientIdentifiers(patient);
}

Example 33 with PatientIdentifier

use of org.openmrs.PatientIdentifier in project openmrs-core by openmrs.

the class PatientDAOTest method getPatients_shouldNotGetExcessPatientsOnIdentifierAndAttributeMatch.

/**
 * @see HibernatePatientDAO#getPatients(String, Integer, Integer)
 */
@Test
public void getPatients_shouldNotGetExcessPatientsOnIdentifierAndAttributeMatch() {
    globalPropertiesTestHelper.setGlobalProperty(OpenmrsConstants.GLOBAL_PROPERTY_PERSON_ATTRIBUTE_SEARCH_MATCH_MODE, OpenmrsConstants.GLOBAL_PROPERTY_PERSON_ATTRIBUTE_SEARCH_MATCH_ANYWHERE);
    Patient patient = patientService.getPatient(2);
    PatientIdentifier patientIdentifier = new PatientIdentifier("Senior", patientService.getPatientIdentifierType(5), Context.getLocationService().getLocation(1));
    patient.addIdentifier(patientIdentifier);
    patientService.savePatient(patient);
    updateSearchIndex();
    List<Patient> patients = dao.getPatients("Senior", 0, null);
    Assert.assertEquals(patient, patients.get(0));
    Assert.assertEquals(3, patients.size());
    List<Patient> first_patient = dao.getPatients("Senior", 0, 1);
    Assert.assertEquals(patient, first_patient.get(0));
    Assert.assertEquals(1, first_patient.size());
    List<Patient> two_patients_only = dao.getPatients("Senior", 0, 2);
    Assert.assertEquals(2, two_patients_only.size());
    List<Patient> second_patient = dao.getPatients("Senior", 1, 1);
    Assert.assertEquals(1, second_patient.size());
}

Example 34 with PatientIdentifier

use of org.openmrs.PatientIdentifier in project openmrs-core by openmrs.

the class PatientDAOTest method getPatients_shouldFindPatientsEfficiently.

@Test
@Ignore("Designated for manual runs")
public void getPatients_shouldFindPatientsEfficiently() throws IOException, URISyntaxException {
    URL givenNamesIn = getClass().getResource("/org/openmrs/api/db/givenNames.csv");
    List<String> givenNames = FileUtils.readLines(new File(givenNamesIn.toURI()));
    URL familyNamesIn = getClass().getResource("/org/openmrs/api/db/familyNames.csv");
    List<String> familyNames = FileUtils.readLines(new File(familyNamesIn.toURI()));
    List<String> attributes = Arrays.asList("London", "Berlin", "Warsaw", "Paris", "Zurich", "Singapore");
    PatientIdentifierType idType = patientService.getPatientIdentifierTypeByName("Old Identification Number");
    PersonAttributeType attributeType = personService.getPersonAttributeTypeByName("Birthplace");
    attributeType.setSearchable(true);
    Context.getPersonService().savePersonAttributeType(attributeType);
    Location location = locationService.getLocation(1);
    // set the seed to have repeatable results
    Random random = new Random(100);
    List<String> generatedPatients = new ArrayList<>();
    for (int i = 0; i < 20000; i++) {
        int given = random.nextInt(givenNames.size());
        int family = random.nextInt(familyNames.size());
        int attribute = random.nextInt(attributes.size());
        generatedPatients.add((i + 1000) + " " + givenNames.get(given) + " " + familyNames.get(family) + " " + attributes.get(attribute));
        PersonName personName = new PersonName(givenNames.get(given), null, familyNames.get(family));
        Patient patient = new Patient();
        patient.setGender("m");
        patient.addIdentifier(new PatientIdentifier("" + (i + 1000), idType, location));
        patient.addName(personName);
        PersonAttribute personAttribute = new PersonAttribute();
        personAttribute.setAttributeType(attributeType);
        personAttribute.setValue(attributes.get(attribute));
        patient.addAttribute(personAttribute);
        patientService.savePatient(patient);
        if (i % 100 == 0) {
            System.out.println("Created " + i + " patients!");
            Context.flushSession();
            Context.clearSession();
        }
    }
    File file = File.createTempFile("generated-patients-", ".csv");
    FileUtils.writeLines(file, generatedPatients);
    System.out.println("Dumped generated patients to " + file.getAbsolutePath());
    long time = System.currentTimeMillis();
    updateSearchIndex();
    time = System.currentTimeMillis() - time;
    System.out.println("Indexing took " + time + " ms.");
    // get Lucene up to speed...
    patientService.getPatients("Aaaaa");
    time = System.currentTimeMillis();
    List<Patient> results = patientService.getPatients("Al");
    time = System.currentTimeMillis() - time;
    System.out.println("Starts with search for 'Al' name returned " + results.size() + " in " + time + " ms");
    time = System.currentTimeMillis();
    results = patientService.getPatients("Al", 0, 15);
    time = System.currentTimeMillis() - time;
    System.out.println("Starts with search for 'Al' name limited to 15 results returned in " + time + " ms");
    time = System.currentTimeMillis();
    results = patientService.getPatients("Al Dem");
    time = System.currentTimeMillis() - time;
    System.out.println("Starts with search for 'Al Dem' name returned " + results.size() + " in " + time + " ms");
    time = System.currentTimeMillis();
    results = patientService.getPatients("Al Dem", 0, 15);
    time = System.currentTimeMillis() - time;
    System.out.println("Starts with search for 'Al Dem' name limited to 15 results returned in " + time + " ms");
    time = System.currentTimeMillis();
    results = patientService.getPatients("Jack");
    time = System.currentTimeMillis() - time;
    System.out.println("Starts with search for 'Jack' name returned " + results.size() + " in " + time + " ms");
    time = System.currentTimeMillis();
    results = patientService.getPatients("Jack", 0, 15);
    time = System.currentTimeMillis() - time;
    System.out.println("Starts with search for 'Jack' name limited to 15 results returned in " + time + " ms");
    time = System.currentTimeMillis();
    results = patientService.getPatients("Jack Sehgal");
    time = System.currentTimeMillis() - time;
    System.out.println("Starts with search for 'Jack Sehgal' name returned " + results.size() + " in " + time + " ms");
    time = System.currentTimeMillis();
    results = patientService.getPatients("Jack Sehgal", 0, 15);
    time = System.currentTimeMillis() - time;
    System.out.println("Starts with search for 'Jack Sehgal' name limited to 15 results returned in " + time + " ms");
    Context.getAdministrationService().setGlobalProperty(OpenmrsConstants.GLOBAL_PROPERTY_PATIENT_SEARCH_MATCH_MODE, OpenmrsConstants.GLOBAL_PROPERTY_PATIENT_SEARCH_MATCH_ANYWHERE);
    time = System.currentTimeMillis();
    results = patientService.getPatients("aso");
    time = System.currentTimeMillis() - time;
    System.out.println("Anywhere search for 'aso' name returned " + results.size() + " in " + time + " ms");
    time = System.currentTimeMillis();
    results = patientService.getPatients("aso", 0, 15);
    time = System.currentTimeMillis() - time;
    System.out.println("Anywhere search for 'aso' name limited to 15 results returned in " + time + " ms");
    time = System.currentTimeMillis();
    results = patientService.getPatients("aso os");
    time = System.currentTimeMillis() - time;
    System.out.println("Anywhere search for 'aso os' name returned " + results.size() + " in " + time + " ms");
    time = System.currentTimeMillis();
    results = patientService.getPatients("aso os", 0, 15);
    time = System.currentTimeMillis() - time;
    System.out.println("Anywhere search for 'aso os' limited to 15 results returned in " + time + " ms");
    time = System.currentTimeMillis();
    results = patientService.getPatients("9243");
    time = System.currentTimeMillis() - time;
    System.out.println("Exact search for '9243' identifier returned " + results.size() + " in " + time + " ms");
    time = System.currentTimeMillis();
    results = patientService.getPatients("London");
    time = System.currentTimeMillis() - time;
    System.out.println("Exact search for 'London' attribute returned " + results.size() + " in " + time + " ms");
    time = System.currentTimeMillis();
    results = patientService.getPatients("London", 0, 15);
    time = System.currentTimeMillis() - time;
    System.out.println("Exact search for 'London' attribute limited to 15 results returned in " + time + " ms");
    Context.getAdministrationService().setGlobalProperty(OpenmrsConstants.GLOBAL_PROPERTY_PERSON_ATTRIBUTE_SEARCH_MATCH_MODE, OpenmrsConstants.GLOBAL_PROPERTY_PERSON_ATTRIBUTE_SEARCH_MATCH_ANYWHERE);
    time = System.currentTimeMillis();
    results = patientService.getPatients("uric");
    time = System.currentTimeMillis() - time;
    System.out.println("Anywhere search for 'uric' attribute returned " + results.size() + " in " + time + " ms");
    time = System.currentTimeMillis();
    results = patientService.getPatients("uric", 0, 15);
    time = System.currentTimeMillis() - time;
    System.out.println("Anywhere search for 'uric' attribute limited to 15 results returned in " + time + " ms");
}

Example 35 with PatientIdentifier

use of org.openmrs.PatientIdentifier in project openmrs-core by openmrs.

the class PatientDAOTest method getPatients_shouldGetNewPatientByIdentifierStartMatch.

@Test
public void getPatients_shouldGetNewPatientByIdentifierStartMatch() {
    String oldPropertyValue = globalPropertiesTestHelper.setGlobalProperty(OpenmrsConstants.GLOBAL_PROPERTY_PATIENT_IDENTIFIER_SEARCH_MATCH_MODE, OpenmrsConstants.GLOBAL_PROPERTY_PATIENT_SEARCH_MATCH_START);
    Patient patient = patientService.getPatient(2);
    PatientIdentifier patientIdentifier = new PatientIdentifier("OM292", patientService.getPatientIdentifierType(5), Context.getLocationService().getLocation(1));
    patient.addIdentifier(patientIdentifier);
    patientService.savePatient(patient);
    updateSearchIndex();
    // Check for partial identifier match
    List<Patient> patients = dao.getPatients("OM", false, 0, null);
    Assert.assertEquals(1, patients.size());
    Assert.assertEquals("OM292", patients.get(0).getPatientIdentifier(5).toString());
    if (oldPropertyValue != null) {
        globalPropertiesTestHelper.setGlobalProperty(OpenmrsConstants.GLOBAL_PROPERTY_PATIENT_IDENTIFIER_SEARCH_MATCH_MODE, oldPropertyValue);
    } else {
        globalPropertiesTestHelper.purgeGlobalProperty(OpenmrsConstants.GLOBAL_PROPERTY_PATIENT_IDENTIFIER_SEARCH_MATCH_MODE);
    }
}