Examples with PatientIdentifierException org.openmrs.api.PatientIdentifierException used on opensource projects

Example 1 with PatientIdentifierException

use of org.openmrs.api.PatientIdentifierException in project openmrs-core by openmrs.

the class HL7ServiceImpl method createPersonFromNK1.

/**
 * @see org.openmrs.hl7.HL7Service#createPersonFromNK1(ca.uhn.hl7v2.model.v25.segment.NK1)
 */
@Override
public Person createPersonFromNK1(NK1 nk1) throws HL7Exception {
    // NOTE: following block (with minor modifications) stolen from
    // ADTA28Handler
    // TODO: generalize this for use with both PID and NK1 segments
    Person person = new Person();
    // UUID
    CX[] identifiers = nk1.getNextOfKinAssociatedPartySIdentifiers();
    String uuid = getUuidFromIdentifiers(identifiers);
    if (Context.getPersonService().getPersonByUuid(uuid) != null) {
        throw new HL7Exception("Non-unique UUID '" + uuid + "' for new person");
    }
    person.setUuid(uuid);
    // Patient Identifiers
    List<PatientIdentifier> goodIdentifiers = new ArrayList<>();
    for (CX id : identifiers) {
        String assigningAuthority = id.getAssigningAuthority().getNamespaceID().getValue();
        String hl7PatientId = id.getIDNumber().getValue();
        log.debug("identifier has id=" + hl7PatientId + " assigningAuthority=" + assigningAuthority);
        if (assigningAuthority != null && assigningAuthority.length() > 0) {
            try {
                PatientIdentifierType pit = Context.getPatientService().getPatientIdentifierTypeByName(assigningAuthority);
                if (pit == null) {
                    if (!"UUID".equals(assigningAuthority)) {
                        log.warn("Can't find PatientIdentifierType named '" + assigningAuthority + "'");
                    }
                    // skip identifiers with unknown type
                    continue;
                }
                PatientIdentifier pi = new PatientIdentifier();
                pi.setIdentifierType(pit);
                pi.setIdentifier(hl7PatientId);
                // Get default location
                Location location = Context.getLocationService().getDefaultLocation();
                if (location == null) {
                    throw new HL7Exception("Cannot find default location");
                }
                pi.setLocation(location);
                try {
                    PatientIdentifierValidator.validateIdentifier(pi);
                    goodIdentifiers.add(pi);
                } catch (PatientIdentifierException ex) {
                    log.warn("Patient identifier in NK1 is invalid: " + pi, ex);
                }
            } catch (Exception e) {
                log.error("Uncaught error parsing/creating patient identifier '" + hl7PatientId + "' for assigning authority '" + assigningAuthority + "'", e);
            }
        } else {
            log.debug("NK1 contains identifier with no assigning authority");
            continue;
        }
    }
    if (!goodIdentifiers.isEmpty()) {
        // If we have one identifier, set it as the preferred to make the validator happy.
        if (goodIdentifiers.size() == 1) {
            goodIdentifiers.get(0).setPreferred(true);
        }
        // cast the person as a Patient and add identifiers
        person = new Patient(person);
        ((Patient) person).addIdentifiers(goodIdentifiers);
    }
    // Person names
    for (XPN patientNameX : nk1.getNKName()) {
        PersonName name = new PersonName();
        name.setFamilyName(patientNameX.getFamilyName().getSurname().getValue());
        name.setGivenName(patientNameX.getGivenName().getValue());
        name.setMiddleName(patientNameX.getSecondAndFurtherGivenNamesOrInitialsThereof().getValue());
        person.addName(name);
    }
    // Gender (checks for null, but not for 'M' or 'F')
    String gender = nk1.getAdministrativeSex().getValue();
    if (gender == null) {
        throw new HL7Exception("Missing gender in an NK1 segment");
    }
    gender = gender.toUpperCase();
    if (!OpenmrsConstants.GENDER().containsKey(gender)) {
        throw new HL7Exception("Unrecognized gender: " + gender);
    }
    person.setGender(gender);
    // Date of Birth
    TS dateOfBirth = nk1.getDateTimeOfBirth();
    if (dateOfBirth == null || dateOfBirth.getTime() == null || dateOfBirth.getTime().getValue() == null) {
        throw new HL7Exception("Missing birth date in an NK1 segment");
    }
    person.setBirthdate(HL7Util.parseHL7Timestamp(dateOfBirth.getTime().getValue()));
    // Estimated birthdate?
    ID precisionTemp = dateOfBirth.getDegreeOfPrecision();
    if (precisionTemp != null && precisionTemp.getValue() != null) {
        String precision = precisionTemp.getValue().toUpperCase();
        log.debug("The birthdate is estimated: " + precision);
        if ("Y".equals(precision) || "L".equals(precision)) {
            person.setBirthdateEstimated(true);
        }
    }
    // save the new person or patient
    if (person instanceof Patient) {
        Context.getPatientService().savePatient((Patient) person);
    } else {
        Context.getPersonService().savePerson(person);
    }
    return person;
}

Example 2 with PatientIdentifierException

use of org.openmrs.api.PatientIdentifierException in project openmrs-core by openmrs.

the class PatientIdentifierValidator method validateIdentifier.

/**
 * Checks that the given {@link PatientIdentifier} is valid
 *
 * @param pi - the {@link PatientIdentifier} to validate
 * @throws PatientIdentifierException if the {@link PatientIdentifier} is invalid
 * @should fail validation if PatientIdentifier is null
 * @should pass validation if PatientIdentifier is voided
 * @should fail validation if another patient has a matching identifier of the same type
 * @should pass if in use and id type uniqueness is set to non unique
 * @see #validateIdentifier(String, PatientIdentifierType)
 */
public static void validateIdentifier(PatientIdentifier pi) throws PatientIdentifierException {
    // Validate that the identifier is non-null
    if (pi == null) {
        throw new BlankIdentifierException("PatientIdentifier.error.null");
    }
    // Only validate if the PatientIdentifier is not voided
    if (!pi.getVoided()) {
        // Check that this is a valid identifier
        validateIdentifier(pi.getIdentifier(), pi.getIdentifierType());
        // Check that location is included if it is required (default behavior is to require it)
        LocationBehavior lb = pi.getIdentifierType().getLocationBehavior();
        if (pi.getLocation() == null && (lb == null || lb == LocationBehavior.REQUIRED)) {
            String identifierString = (pi.getIdentifier() != null) ? pi.getIdentifier() : "";
            throw new PatientIdentifierException(Context.getMessageSourceService().getMessage("PatientIdentifier.location.null", new Object[] { identifierString }, Context.getLocale()));
        }
        if (pi.getIdentifierType().getUniquenessBehavior() != UniquenessBehavior.NON_UNIQUE && Context.getPatientService().isIdentifierInUseByAnotherPatient(pi)) {
            // Check is already in use by another patient
            throw new IdentifierNotUniqueException(Context.getMessageSourceService().getMessage("PatientIdentifier.error.notUniqueWithParameter", new Object[] { pi.getIdentifier() }, Context.getLocale()), pi);
        }
    }
}

Example 3 with PatientIdentifierException

use of org.openmrs.api.PatientIdentifierException in project openmrs-core by openmrs.

the class ADTA28Handler method createPatient.

// Create a new patient when this patient doesn't exist in the database
private Patient createPatient(PID pid, String creatorName) throws HL7Exception {
    Patient patient = new Patient();
    // Try to use the specified username as the creator
    User creator = Context.getUserService().getUserByUsername(creatorName);
    if (creator != null) {
        patient.setCreator(creator);
    }
    // Create all patient identifiers specified in the message
    // Copied code from resolvePatientId() in HL7ServiceImpl.java
    CX[] idList = pid.getPatientIdentifierList();
    if (idList == null || idList.length < 1) {
        throw new HL7Exception("Missing patient identifier in PID segment");
    }
    List<PatientIdentifier> goodIdentifiers = new ArrayList<>();
    for (CX id : idList) {
        String assigningAuthority = id.getAssigningAuthority().getNamespaceID().getValue();
        String hl7PatientId = id.getIDNumber().getValue();
        log.debug("identifier has id=" + hl7PatientId + " assigningAuthority=" + assigningAuthority);
        if (assigningAuthority != null && assigningAuthority.length() > 0) {
            try {
                PatientIdentifierType pit = Context.getPatientService().getPatientIdentifierTypeByName(assigningAuthority);
                if (pit == null) {
                    log.warn("Can't find PatientIdentifierType named '" + assigningAuthority + "'");
                    // skip identifiers with unknown type
                    continue;
                }
                PatientIdentifier pi = new PatientIdentifier();
                if (creator != null) {
                    pi.setCreator(creator);
                }
                pi.setIdentifierType(pit);
                pi.setIdentifier(hl7PatientId);
                // Get default location
                Location location = Context.getLocationService().getDefaultLocation();
                if (location == null) {
                    throw new HL7Exception("Cannot find default location");
                }
                pi.setLocation(location);
                try {
                    PatientIdentifierValidator.validateIdentifier(pi);
                    goodIdentifiers.add(pi);
                } catch (PatientIdentifierException ex) {
                    log.warn("Patient identifier in PID is invalid: " + pi, ex);
                }
            } catch (Exception e) {
                log.error("Uncaught error parsing/creating patient identifier '" + hl7PatientId + "' for assigning authority '" + assigningAuthority + "'", e);
            }
        } else {
            log.error("PID contains identifier with no assigning authority");
            continue;
        }
    }
    if (goodIdentifiers.isEmpty()) {
        throw new HL7Exception("PID segment has no recognizable patient identifiers.");
    }
    patient.addIdentifiers(goodIdentifiers);
    // Extract patient name from the message
    XPN patientNameX = pid.getPatientName(0);
    if (patientNameX == null) {
        throw new HL7Exception("Missing patient name in the PID segment");
    }
    // Patient name
    PersonName name = new PersonName();
    name.setFamilyName(patientNameX.getFamilyName().getSurname().getValue());
    name.setGivenName(patientNameX.getGivenName().getValue());
    name.setMiddleName(patientNameX.getSecondAndFurtherGivenNamesOrInitialsThereof().getValue());
    if (creator != null) {
        name.setCreator(creator);
    }
    patient.addName(name);
    // Gender (checks for null, but not for 'M' or 'F')
    String gender = pid.getAdministrativeSex().getValue();
    if (gender == null) {
        throw new HL7Exception("Missing gender in the PID segment");
    }
    gender = gender.toUpperCase();
    if (!OpenmrsConstants.GENDER().containsKey(gender)) {
        throw new HL7Exception("Unrecognized gender: " + gender);
    }
    patient.setGender(gender);
    // Date of Birth
    TS dateOfBirth = pid.getDateTimeOfBirth();
    if (dateOfBirth == null || dateOfBirth.getTime() == null || dateOfBirth.getTime().getValue() == null) {
        throw new HL7Exception("Missing birth date in the PID segment");
    }
    patient.setBirthdate(tsToDate(dateOfBirth));
    // Estimated birthdate?
    ID precisionTemp = dateOfBirth.getDegreeOfPrecision();
    if (precisionTemp != null && precisionTemp.getValue() != null) {
        String precision = precisionTemp.getValue().toUpperCase();
        log.debug("The birthdate is estimated: " + precision);
        if ("Y".equals(precision) || "L".equals(precision)) {
            patient.setBirthdateEstimated(true);
        }
    }
    return patient;
}