Examples with ConceptService org.openmrs.api.ConceptService used on opensource projects

Example 16 with ConceptService

use of org.openmrs.api.ConceptService in project openmrs-core by openmrs.

the class WorkflowCollectionEditor method setAsText.

/**
 * Takes a "program_id:list" where program_id is the id of the program that this collection is
 * for (or not present, if it's a new program) and list is a space-separated list of concept
 * ids. This class is a bit of a hack, because I don't know a better way to do this. -DJ The
 * purpose is to retire and un-retire workflows where possible rather than deleting and creating
 * them.
 *
 * @should update workflows in program
 */
@Override
public void setAsText(String text) throws IllegalArgumentException {
    if (StringUtils.hasText(text)) {
        ConceptService cs = Context.getConceptService();
        ProgramWorkflowService pws = Context.getProgramWorkflowService();
        try {
            int ind = text.indexOf(":");
            String progIdStr = text.substring(0, ind);
            text = text.substring(ind + 1);
            if (program == null) {
                // if a program wasn't passed in, try to look it up now
                program = pws.getProgram(Integer.valueOf(progIdStr));
            }
        } catch (Exception ex) {
        }
        String[] conceptIds = text.split(" ");
        Set<ProgramWorkflow> oldSet = program == null ? new HashSet<>() : program.getAllWorkflows();
        Set<Integer> newConceptIds = new HashSet<>();
        for (String id : conceptIds) {
            if (id.trim().length() == 0) {
                continue;
            }
            log.debug("trying " + id);
            newConceptIds.add(Integer.valueOf(id.trim()));
        }
        // go through oldSet and see what we need to keep and what we need to unvoid
        Set<Integer> alreadyDone = new HashSet<>();
        for (ProgramWorkflow pw : oldSet) {
            if (!newConceptIds.contains(pw.getConcept().getConceptId())) {
                pw.setRetired(true);
            } else if (newConceptIds.contains(pw.getConcept().getConceptId()) && pw.getRetired()) {
                pw.setRetired(false);
            }
            alreadyDone.add(pw.getConcept().getConceptId());
        }
        // now add any new ones
        newConceptIds.removeAll(alreadyDone);
        for (Integer conceptId : newConceptIds) {
            ProgramWorkflow pw = new ProgramWorkflow();
            pw.setProgram(program);
            pw.setConcept(cs.getConcept(conceptId));
            oldSet.add(pw);
        }
        setValue(oldSet);
    } else {
        setValue(null);
    }
}

Example 17 with ConceptService

use of org.openmrs.api.ConceptService in project openmrs-core by openmrs.

the class ORUR01HandlerTest method processMessage_shouldNotCreateProblemListObservationWithConceptProposals.

/**
 * Tests that a ConceptProposal row can be written by the processor
 *
 * @see ORUR01Handler#processMessage(Message)
 */
@Test
public void processMessage_shouldNotCreateProblemListObservationWithConceptProposals() throws Exception {
    ObsService obsService = Context.getObsService();
    ConceptService conceptService = Context.getConceptService();
    EncounterService encService = Context.getEncounterService();
    String hl7String = "MSH|^~\\&|FORMENTRY|AMRS.ELD|HL7LISTENER|AMRS.ELD|20080630094800||ORU^R01|kgWdFt0SVwwClOfJm3pe|P|2.5|1||||||||15^AMRS.ELD.FORMID\r" + "PID|||3^^^^~d3811480^^^^||John3^Doe^||\r" + "PV1||O|1^Unknown||||1^Super User (admin)|||||||||||||||||||||||||||||||||||||20080208|||||||V\r" + "ORC|RE||||||||20080208000000|1^Super User\r" + "OBR|1|||1238^MEDICAL RECORD OBSERVATIONS^99DCT\r" + "OBR|1|||1284^PROBLEM LIST^99DCT\r" + "OBX|1|CWE|6042^PROBLEM ADDED^99DCT||PROPOSED^SEVERO DOLOR DE CABEZA^99DCT|||||||||20080208";
    Message hl7message = parser.parse(hl7String);
    router.processMessage(hl7message);
    Patient patient = new Patient(3);
    // check for any obs
    assertEquals("There should not be any obs created for #3", 0, obsService.getObservationsByPerson(patient).size());
    // check for a new encounter
    assertEquals("There should be 1 new encounter created for #3", 1, encService.getEncountersByPatient(patient).size());
    // check for the proposed concept
    List<ConceptProposal> proposedConcepts = conceptService.getConceptProposals("SEVERO DOLOR DE CABEZA");
    assertEquals("There should be a proposed concept by this name", 1, proposedConcepts.size());
    assertEquals(encService.getEncountersByPatient(patient).get(0), proposedConcepts.get(0).getEncounter());
}

Example 18 with ConceptService

use of org.openmrs.api.ConceptService in project openmrs-core by openmrs.

the class OrderFrequencyValidatorTest method validate_shouldPassValidationIfFieldLengthsAreCorrect.

/**
 * @see OrderFrequencyValidator#validate(Object, org.springframework.validation.Errors)
 */
@Test
public void validate_shouldPassValidationIfFieldLengthsAreCorrect() {
    ConceptService cs = Context.getConceptService();
    Concept concept = new Concept();
    ConceptName cn = new ConceptName("new name", Context.getLocale());
    concept.setDatatype(cs.getConceptDatatype(1));
    concept.setConceptClass(cs.getConceptClass(19));
    concept.addName(cn);
    concept.addDescription(new ConceptDescription("some description", null));
    cs.saveConcept(concept);
    OrderFrequency orderFrequency = new OrderFrequency();
    orderFrequency.setConcept(concept);
    orderFrequency.setRetireReason("retireReason");
    Errors errors = new BindException(orderFrequency, "orderFrequency");
    new OrderFrequencyValidator().validate(orderFrequency, errors);
    Assert.assertFalse(errors.hasErrors());
}

Example 19 with ConceptService

use of org.openmrs.api.ConceptService in project openmrs-core by openmrs.

the class DrugOrderValidatorTest method validate_shouldFailIfDurationUnitsHasNoMappingToSNOMEDCTSource.

/**
 * @see DrugOrderValidator#validate(Object, org.springframework.validation.Errors)
 */
@Test
public void validate_shouldFailIfDurationUnitsHasNoMappingToSNOMEDCTSource() {
    Patient patient = Context.getPatientService().getPatient(7);
    CareSetting careSetting = Context.getOrderService().getCareSetting(2);
    OrderType orderType = Context.getOrderService().getOrderTypeByName("Drug order");
    // place drug order
    DrugOrder order = new DrugOrder();
    Encounter encounter = Context.getEncounterService().getEncounter(3);
    order.setEncounter(encounter);
    ConceptService cs = Context.getConceptService();
    order.setConcept(cs.getConcept(5497));
    order.setPatient(patient);
    order.setCareSetting(careSetting);
    order.setOrderer(Context.getProviderService().getProvider(1));
    order.setDateActivated(encounter.getEncounterDatetime());
    order.setOrderType(orderType);
    order.setDosingType(FreeTextDosingInstructions.class);
    order.setInstructions("None");
    order.setDosingInstructions("Test Instruction");
    order.setDuration(20);
    order.setDurationUnits(cs.getConcept(28));
    Errors errors = new BindException(order, "order");
    new DrugOrderValidator().validate(order, errors);
    assertEquals("DrugOrder.error.durationUnitsNotMappedToSnomedCtDurationCode", errors.getFieldError("durationUnits").getCode());
}

Example 20 with ConceptService

use of org.openmrs.api.ConceptService in project openmrs-core by openmrs.

the class ConceptAttributeTypeValidator method validate.

@Override
public void validate(Object obj, Errors errors) {
    super.validate(obj, errors);
    ConceptAttributeType conceptAttributeType = (ConceptAttributeType) obj;
    ConceptService conceptService = Context.getConceptService();
    if (conceptAttributeType.getName() != null && !conceptAttributeType.getName().isEmpty()) {
        ConceptAttributeType attributeType = conceptService.getConceptAttributeTypeByName(conceptAttributeType.getName());
        if (attributeType != null && !attributeType.getUuid().equals(conceptAttributeType.getUuid())) {
            errors.rejectValue("name", "ConceptAttributeType.error.nameAlreadyInUse");
        }
    } else {
        ValidationUtils.rejectIfEmptyOrWhitespace(errors, "name", "ConceptAttributeType.error.nameEmpty");
    }
    ValidateUtil.validateFieldLengths(errors, obj.getClass(), "name", "description", "datatypeClassname", "preferredHandlerClassname", "retireReason");
}