Examples with ConceptService org.openmrs.api.ConceptService used on opensource projects

Example 11 with ConceptService

use of org.openmrs.api.ConceptService in project openmrs-module-coreapps by openmrs.

the class ParserEncounterIntoSimpleObjectsTest method setUp.

@Before
public void setUp() throws Exception {
    emrApiProperties = mock(EmrApiProperties.class);
    conceptService = mock(ConceptService.class);
    locationService = mock(LocationService.class);
    dispositionService = mock(DispositionService.class);
    MockMetadataTestUtil.setupMockConceptService(conceptService, emrApiProperties);
    emrConceptService = mock(EmrConceptService.class);
    diagnosisMetadata = MockMetadataTestUtil.setupDiagnosisMetadata(emrApiProperties, conceptService);
    dispositionDescriptor = MockMetadataTestUtil.setupDispositionDescriptor(conceptService);
    when(dispositionService.getDispositionDescriptor()).thenReturn(dispositionDescriptor);
    TestUiUtils testUiUtils = new TestUiUtils();
    testUiUtils.setMockFormattingConcepts(true);
    uiUtils = testUiUtils;
    encounter = new Encounter();
    parser = new ParserEncounterIntoSimpleObjects(encounter, uiUtils, emrApiProperties, locationService, dispositionService);
}

Example 12 with ConceptService

use of org.openmrs.api.ConceptService in project openmrs-module-coreapps by openmrs.

the class CoreAppsActivator method contextRefreshed.

/**
 * @see ModuleActivator#contextRefreshed()
 */
public void contextRefreshed() {
    ConceptService conceptService = Context.getConceptService();
    EmrApiProperties emrApiProperties = Context.getRegisteredComponent("emrApiProperties", EmrApiProperties.class);
    DispositionService dispositionService = Context.getRegisteredComponent("dispositionService", DispositionService.class);
    AdtService adtService = Context.getRegisteredComponent("adtService", AdtService.class);
    UiUtils uiUtils = Context.getRegisteredComponent("uiUtils", BasicUiUtils.class);
    if (ModuleFactory.isModuleStarted("htmlformentry")) {
        HtmlFormEntryService htmlFormEntryService = Context.getService(HtmlFormEntryService.class);
        EncounterDiagnosesTagHandler encounterDiagnosesTagHandler = CoreAppsActivator.setupEncounterDiagnosesTagHandler(conceptService, adtService, emrApiProperties, uiUtils);
        htmlFormEntryService.addHandler(CoreAppsConstants.HTMLFORMENTRY_ENCOUNTER_DIAGNOSES_TAG_NAME, encounterDiagnosesTagHandler);
        EncounterDispositionTagHandler encounterDispositionTagHandler = CoreAppsActivator.setupEncounterDispositionTagHandler(emrApiProperties, dispositionService, adtService);
        htmlFormEntryService.addHandler(CoreAppsConstants.HTMLFORMENTRY_ENCOUNTER_DISPOSITION_TAG_NAME, encounterDispositionTagHandler);
        htmlFormEntryService.addHandler(CoreAppsConstants.HTMLFORMENTRY_CODED_OR_FREE_TEXT_OBS_TAG_NAME, new CodedOrFreeTextObsTagHandler());
    }
    log.info("Core Apps Module refreshed");
}

Example 13 with ConceptService

use of org.openmrs.api.ConceptService in project openmrs-module-coreapps by openmrs.

the class CodedOrFreeTextAnswerListWidget method getValue.

@Override
public Object getValue(FormEntryContext context, HttpServletRequest request) {
    String fieldName = context.getFieldName(this);
    String[] submitted = request.getParameterValues(fieldName);
    if (submitted != null && submitted.length > 1) {
        throw new IllegalArgumentException("Expected one submitted parameter value for " + fieldName + " but got " + submitted.length);
    }
    try {
        List<CodedOrFreeTextAnswer> results = new ArrayList<CodedOrFreeTextAnswer>();
        if (submitted != null && StringUtils.isNotEmpty(submitted[0])) {
            ArrayNode array = new ObjectMapper().readValue(submitted[0], ArrayNode.class);
            ConceptService conceptService = Context.getConceptService();
            for (JsonNode node : array) {
                String conceptNameUuid = node.path("ConceptName").getTextValue();
                String conceptUuid = node.path("Concept").getTextValue();
                String nonCodedValue = node.path("NonCodedValue").getTextValue();
                if (conceptNameUuid != null) {
                    results.add(new CodedOrFreeTextAnswer(conceptService.getConceptNameByUuid(conceptNameUuid)));
                } else if (conceptUuid != null) {
                    results.add(new CodedOrFreeTextAnswer(conceptService.getConceptByUuid(conceptUuid)));
                } else {
                    results.add(new CodedOrFreeTextAnswer(nonCodedValue));
                }
            }
        }
        return results;
    } catch (IOException e) {
        throw new IllegalArgumentException(e);
    }
}

Example 14 with ConceptService

use of org.openmrs.api.ConceptService in project openmrs-module-pihcore by PIH.

the class PihCoreActivator method started.

// TODO test
@Override
public void started() {
    try {
        MetadataMappingService metadataMappingService = Context.getService(MetadataMappingService.class);
        PatientService patientService = Context.getPatientService();
        FormService formService = Context.getFormService();
        LocationService locationService = Context.getLocationService();
        EncounterService encounterService = Context.getEncounterService();
        VisitService visitService = Context.getVisitService();
        IdentifierSourceService identifierSourceService = Context.getService(IdentifierSourceService.class);
        ConceptService conceptService = Context.getService(ConceptService.class);
        if (config == null) {
            // hack to allow injecting a mock config for testing
            // currently only one of these
            config = Context.getRegisteredComponents(Config.class).get(0);
        }
        setDispositionConfig(config);
        installMetadataBundles(config);
        setGlobalProperties(config);
        setExtraIdentifierTypes(metadataMappingService, patientService, config);
        MergeActionsSetup.registerMergeActions();
        LocationTagSetup.setupLocationTags(locationService, config);
        HtmlFormSetup.setupHtmlFormEntryTagHandlers();
        MetadataMappingsSetup.setupGlobalMetadataMappings(metadataMappingService, locationService, encounterService, visitService);
        MetadataMappingsSetup.setupPrimaryIdentifierTypeBasedOnCountry(metadataMappingService, patientService, config);
        MetadataMappingsSetup.setupFormMetadataMappings(metadataMappingService);
        PatientIdentifierSetup.setupIdentifierGeneratorsIfNecessary(identifierSourceService, locationService, config);
        PacIntegrationSetup.setup(config);
        AttachmentsSetup.migrateAttachmentsConceptsIfNecessary(conceptService);
    // RetireProvidersSetup.setupRetireProvidersTask();
    } catch (Exception e) {
        Module mod = ModuleFactory.getModuleById("pihcore");
        ModuleFactory.stopModule(mod);
        throw new RuntimeException("failed to setup the required modules", e);
    }
}

Example 15 with ConceptService

use of org.openmrs.api.ConceptService in project openmrs-core by openmrs.

the class OpenmrsUtil method conceptListHelper.

// TODO: properly handle duplicates
public static List<Concept> conceptListHelper(String descriptor) {
    List<Concept> ret = new ArrayList<>();
    if (descriptor == null || descriptor.length() == 0) {
        return ret;
    }
    ConceptService cs = Context.getConceptService();
    for (StringTokenizer st = new StringTokenizer(descriptor, "|"); st.hasMoreTokens(); ) {
        String s = st.nextToken().trim();
        boolean isSet = s.startsWith("set:");
        if (isSet) {
            s = s.substring(4).trim();
        }
        Concept c = null;
        if (s.startsWith("name:")) {
            String name = s.substring(5).trim();
            c = cs.getConceptByName(name);
        } else {
            try {
                c = cs.getConcept(Integer.valueOf(s.trim()));
            } catch (Exception ex) {
            }
        }
        if (c != null) {
            if (isSet) {
                List<Concept> inSet = cs.getConceptsByConceptSet(c);
                ret.addAll(inSet);
            } else {
                ret.add(c);
            }
        }
    }
    return ret;
}