Examples with Diagnosis org.openmrs.module.emrapi.diagnosis.Diagnosis used on opensource projects

Example 1 with Diagnosis

use of org.openmrs.module.emrapi.diagnosis.Diagnosis in project openmrs-module-coreapps by openmrs.

the class EncounterDiagnosesFragmentControllerTest method testController_createdProperPriorDiagnoses.

@Test
public void testController_createdProperPriorDiagnoses() throws Exception {
    EncounterDiagnosesFragmentController controller = new EncounterDiagnosesFragmentController();
    ConceptName specificName = new ConceptName("Specific Name", Context.getLocale());
    specificName.setId(1);
    specificName.setLocalePreferred(true);
    Concept conceptForSpecificName = new Concept();
    conceptForSpecificName.setId(2);
    conceptForSpecificName.addName(specificName);
    Concept nonSpecificConcept = new Concept();
    nonSpecificConcept.setId(3);
    ConceptName nonSpecificConceptName = new ConceptName("Non-specific concept", Context.getLocale());
    nonSpecificConceptName.setId(4);
    nonSpecificConceptName.setLocalePreferred(true);
    nonSpecificConcept.addName(nonSpecificConceptName);
    List<Diagnosis> diagnoses = new ArrayList<Diagnosis>();
    diagnoses.add(new Diagnosis(new CodedOrFreeTextAnswer(specificName), Diagnosis.Order.PRIMARY));
    diagnoses.add(new Diagnosis(new CodedOrFreeTextAnswer(nonSpecificConcept), Diagnosis.Order.SECONDARY));
    diagnoses.add(new Diagnosis(new CodedOrFreeTextAnswer("Unknown Disease"), Diagnosis.Order.SECONDARY));
    for (Diagnosis d : diagnoses) {
        d.setExistingObs(new Obs());
    }
    FragmentModel model = new FragmentModel();
    controller.controller(new TestUiUtils(), null, diagnoses, model);
    assertThat(((List<String>) model.getAttribute("jsForExisting")).size(), is(0));
    List<String> jsForPrior = (List<String>) model.getAttribute("jsForPrior");
    assertThat(jsForPrior.get(0), is("{ diagnosis: diagnoses.CodedOrFreeTextConceptAnswer({\"word\":null,\"conceptName\":{\"id\":1,\"uuid\":\"" + specificName.getUuid() + "\",\"conceptNameType\":\"FULLY_SPECIFIED\",\"name\":\"Specific Name\"},\"concept\":{\"id\":2,\"uuid\":\"" + conceptForSpecificName.getUuid() + "\",\"conceptMappings\":[],\"preferredName\":\"Specific Name\"}}), confirmed: false, primary: true, existingObs: null }"));
    assertThat(jsForPrior.get(1), is("{ diagnosis: diagnoses.CodedOrFreeTextConceptAnswer({\"word\":null,\"conceptName\":null,\"concept\":{\"id\":3,\"uuid\":\"" + nonSpecificConcept.getUuid() + "\",\"conceptMappings\":[],\"preferredName\":\"Non-specific concept\"}}), confirmed: false, primary: false, existingObs: null }"));
    assertThat(jsForPrior.get(2), is("{ diagnosis: diagnoses.CodedOrFreeTextConceptAnswer('Unknown Disease'), confirmed: false, primary: false, existingObs: null }"));
}

Example 2 with Diagnosis

use of org.openmrs.module.emrapi.diagnosis.Diagnosis in project openmrs-module-coreapps by openmrs.

the class ParserEncounterIntoSimpleObjectsTest method testParsingDiagnoses.

@Test
public void testParsingDiagnoses() throws Exception {
    encounter.addObs(diagnosisMetadata.buildDiagnosisObsGroup(new Diagnosis(new CodedOrFreeTextAnswer("Random Disease"), Diagnosis.Order.PRIMARY)));
    ParsedObs parsed = parser.parseObservations(Locale.ENGLISH);
    assertThat(parsed.getDiagnoses().size(), is(1));
    assertThat(parsed.getDispositions().size(), is(0));
    assertThat(parsed.getObs().size(), is(0));
    assertThat(path(parsed.getDiagnoses(), 0, "question"), is((Object) "coreapps.patientDashBoard.diagnosisQuestion.PRIMARY"));
    assertThat(path(parsed.getDiagnoses(), 0, "answer"), is((Object) "(coreapps.Diagnosis.Certainty.PRESUMED) \"Random Disease\""));
    assertThat(path(parsed.getDiagnoses(), 0, "order"), is((Object) 0));
}

Example 3 with Diagnosis

use of org.openmrs.module.emrapi.diagnosis.Diagnosis in project openmrs-module-coreapps by openmrs.

the class EncounterDiagnosesFragmentController method generateJsForDiagnoses.

private List<String> generateJsForDiagnoses(List<Diagnosis> diagnoses, UiUtils ui) throws Exception {
    // to ensure we have the exact same json format as search results, borrow the simplify method from here
    DiagnosesFragmentController diagnosesFragmentController = new DiagnosesFragmentController();
    List<String> jsForDiagnoses = new ArrayList<String>();
    Collections.sort(diagnoses, new Comparator<Diagnosis>() {

        @Override
        public int compare(Diagnosis left, Diagnosis right) {
            return left.getOrder().compareTo(right.getOrder());
        }
    });
    for (Diagnosis d : diagnoses) {
        CodedOrFreeTextAnswer diagnosis = d.getDiagnosis();
        String jsDiagnosis;
        if (diagnosis.getNonCodedAnswer() != null) {
            jsDiagnosis = "'" + ui.escapeJs(diagnosis.getNonCodedAnswer()) + "'";
        } else {
            ConceptSearchResult csr = new ConceptSearchResult(null, diagnosis.getCodedAnswer(), diagnosis.getSpecificCodedAnswer());
            SimpleObject simple = diagnosesFragmentController.simplify(csr, ui, Context.getLocale());
            jsDiagnosis = simple.toJson();
        }
        jsForDiagnoses.add("{ diagnosis: diagnoses.CodedOrFreeTextConceptAnswer(" + jsDiagnosis + "), confirmed: " + (d.getCertainty().equals(Diagnosis.Certainty.CONFIRMED)) + ", primary: " + (d.getOrder().equals(Diagnosis.Order.PRIMARY)) + ", existingObs: " + d.getExistingObs().getId() + " }");
    }
    return jsForDiagnoses;
}

Example 4 with Diagnosis

use of org.openmrs.module.emrapi.diagnosis.Diagnosis in project openmrs-module-coreapps by openmrs.

the class DiagnosisWidgetFragmentController method controller.

public void controller(FragmentConfiguration config, @InjectBeans PatientDomainWrapper patientWrapper, @InjectBeans CoreAppsProperties properties) {
    config.require("patient");
    Object patient = config.get("patient");
    if (patient instanceof Patient) {
        patientWrapper.setPatient((Patient) patient);
        config.addAttribute("patient", patientWrapper);
    } else if (patient instanceof PatientDomainWrapper) {
        patientWrapper = (PatientDomainWrapper) patient;
    } else {
        throw new IllegalArgumentException("Patient must be of type Patient or PatientDomainWrapper");
    }
    int days = properties.getRecentDiagnosisPeriodInDays();
    Calendar recent = Calendar.getInstance();
    recent.set(Calendar.DATE, -days);
    List<Diagnosis> recentDiagnoses = patientWrapper.getUniqueDiagnosesSince(recent.getTime());
    config.addAttribute("recentDiagnoses", recentDiagnoses);
}

Example 5 with Diagnosis

use of org.openmrs.module.emrapi.diagnosis.Diagnosis in project openmrs-module-coreapps by openmrs.

the class EncounterDiagnosesElement method getExistingDiagnoses.

/**
 * only visible for testing
 * @param context
 * @param diagnosisMetadata
 * @return
 */
List<Diagnosis> getExistingDiagnoses(FormEntryContext context, DiagnosisMetadata diagnosisMetadata) {
    List<Diagnosis> diagnoses = new ArrayList<Diagnosis>();
    Map<Integer, Obs> existing = getExistingDiagnosisObs(context, diagnosisMetadata);
    if (existing != null) {
        for (Obs group : existing.values()) {
            diagnoses.add(diagnosisMetadata.toDiagnosis(group));
        }
    }
    Collections.sort(diagnoses, new Comparator<Diagnosis>() {

        @Override
        public int compare(Diagnosis left, Diagnosis right) {
            return left.getOrder().compareTo(right.getOrder());
        }
    });
    return diagnoses;
}