Examples with PersonMergeLog org.openmrs.person.PersonMergeLog used on opensource projects

Example 26 with PersonMergeLog

use of org.openmrs.person.PersonMergeLog in project openmrs-core by openmrs.

the class PatientServiceImpl method mergePatients.

/**
 * 1) Moves object (encounters/obs) pointing to <code>nonPreferred</code> to
 * <code>preferred</code> 2) Copies data (gender/birthdate/names/ids/etc) from
 * <code>nonPreferred</code> to <code>preferred</code> iff the data is missing or null in
 * <code>preferred</code> 3) <code>notPreferred</code> is marked as voided
 *
 * @param preferred
 * @param notPreferred
 * @throws APIException
 * @see org.openmrs.api.PatientService#mergePatients(org.openmrs.Patient, org.openmrs.Patient)
 */
@Override
public void mergePatients(Patient preferred, Patient notPreferred) throws APIException, SerializationException {
    log.debug("Merging patients: (preferred)" + preferred.getPatientId() + ", (notPreferred) " + notPreferred.getPatientId());
    if (preferred.getPatientId().equals(notPreferred.getPatientId())) {
        log.debug("Merge operation cancelled: Cannot merge user" + preferred.getPatientId() + " to self");
        throw new APIException("Patient.merge.cancelled", new Object[] { preferred.getPatientId() });
    }
    requireNoActiveOrderOfSameType(preferred, notPreferred);
    PersonMergeLogData mergedData = new PersonMergeLogData();
    mergeVisits(preferred, notPreferred, mergedData);
    mergeEncounters(preferred, notPreferred, mergedData);
    mergeProgramEnrolments(preferred, notPreferred, mergedData);
    mergeRelationships(preferred, notPreferred, mergedData);
    mergeObservationsNotContainedInEncounters(preferred, notPreferred, mergedData);
    mergeIdentifiers(preferred, notPreferred, mergedData);
    mergeNames(preferred, notPreferred, mergedData);
    mergeAddresses(preferred, notPreferred, mergedData);
    mergePersonAttributes(preferred, notPreferred, mergedData);
    mergeGenderInformation(preferred, notPreferred, mergedData);
    mergeDateOfBirth(preferred, notPreferred, mergedData);
    mergeDateOfDeath(preferred, notPreferred, mergedData);
    // void the non preferred patient
    Context.getPatientService().voidPatient(notPreferred, "Merged with patient #" + preferred.getPatientId());
    // void the person associated with not preferred patient
    Context.getPersonService().voidPerson(notPreferred, "The patient corresponding to this person has been voided and Merged with patient #" + preferred.getPatientId());
    // associate the Users associated with the not preferred person, to the preferred person.
    changeUserAssociations(preferred, notPreferred, mergedData);
    // Save the newly update preferred patient
    // This must be called _after_ voiding the nonPreferred patient so that
    // a "Duplicate Identifier" error doesn't pop up.
    savePatient(preferred);
    // save the person merge log
    PersonMergeLog personMergeLog = new PersonMergeLog();
    personMergeLog.setWinner(preferred);
    personMergeLog.setLoser(notPreferred);
    personMergeLog.setPersonMergeLogData(mergedData);
    Context.getPersonService().savePersonMergeLog(personMergeLog);
}

Example 27 with PersonMergeLog

use of org.openmrs.person.PersonMergeLog in project openmrs-core by openmrs.

the class PatientServiceImpl method mergeAddresses.

private void mergeAddresses(Patient preferred, Patient notPreferred, PersonMergeLogData mergedData) throws SerializationException {
    // (must be done after all calls to services above so hbm doesn't try to save things prematurely (hacky)
    for (PersonAddress newAddress : notPreferred.getAddresses()) {
        boolean containsAddress = false;
        for (PersonAddress currentAddress : preferred.getAddresses()) {
            containsAddress = currentAddress.equalsContent(newAddress);
            if (containsAddress) {
                break;
            }
        }
        if (!containsAddress) {
            PersonAddress tmpAddress = (PersonAddress) newAddress.clone();
            tmpAddress.setPersonAddressId(null);
            tmpAddress.setVoided(false);
            tmpAddress.setVoidedBy(null);
            tmpAddress.setVoidReason(null);
            // addresses from non-preferred patient shouldn't be marked as preferred
            tmpAddress.setPreferred(false);
            tmpAddress.setUuid(UUID.randomUUID().toString());
            preferred.addAddress(tmpAddress);
            mergedData.addCreatedAddress(tmpAddress.getUuid());
            log.debug("Merging address " + newAddress.getPersonAddressId() + " to " + preferred.getPatientId());
        }
    }
    // copy person attributes
    for (PersonAttribute attr : notPreferred.getAttributes()) {
        if (!attr.getVoided()) {
            PersonAttribute tmpAttr = attr.copy();
            tmpAttr.setPerson(null);
            tmpAttr.setUuid(UUID.randomUUID().toString());
            preferred.addAttribute(tmpAttr);
            mergedData.addCreatedAttribute(tmpAttr.getUuid());
        }
    }
    // move all other patient info
    mergedData.setPriorGender(preferred.getGender());
    if (!"M".equals(preferred.getGender()) && !"F".equals(preferred.getGender())) {
        preferred.setGender(notPreferred.getGender());
    }
    mergedData.setPriorDateOfBirth(preferred.getBirthdate());
    mergedData.setPriorDateOfBirthEstimated(preferred.getBirthdateEstimated());
    if (preferred.getBirthdate() == null || (preferred.getBirthdateEstimated() && !notPreferred.getBirthdateEstimated())) {
        preferred.setBirthdate(notPreferred.getBirthdate());
        preferred.setBirthdateEstimated(notPreferred.getBirthdateEstimated());
    }
    mergedData.setPriorDateOfDeathEstimated(preferred.getDeathdateEstimated());
    if (preferred.getDeathdateEstimated() == null) {
        preferred.setDeathdateEstimated(notPreferred.getDeathdateEstimated());
    }
    mergedData.setPriorDateOfDeath(preferred.getDeathDate());
    if (preferred.getDeathDate() == null) {
        preferred.setDeathDate(notPreferred.getDeathDate());
    }
    if (preferred.getCauseOfDeath() != null) {
        mergedData.setPriorCauseOfDeath(preferred.getCauseOfDeath().getUuid());
    }
    if (preferred.getCauseOfDeath() == null) {
        preferred.setCauseOfDeath(notPreferred.getCauseOfDeath());
    }
    // void the non preferred patient
    Context.getPatientService().voidPatient(notPreferred, "Merged with patient #" + preferred.getPatientId());
    // void the person associated with not preferred patient
    Context.getPersonService().voidPerson(notPreferred, "The patient corresponding to this person has been voided and Merged with patient #" + preferred.getPatientId());
    // associate the Users associated with the not preferred person, to the preferred person.
    changeUserAssociations(preferred, notPreferred, mergedData);
    // Save the newly update preferred patient
    // This must be called _after_ voiding the nonPreferred patient so that
    // a "Duplicate Identifier" error doesn't pop up.
    savePatient(preferred);
    // save the person merge log
    PersonMergeLog personMergeLog = new PersonMergeLog();
    personMergeLog.setWinner(preferred);
    personMergeLog.setLoser(notPreferred);
    personMergeLog.setPersonMergeLogData(mergedData);
    Context.getPersonService().savePersonMergeLog(personMergeLog);
}

Example 28 with PersonMergeLog

use of org.openmrs.person.PersonMergeLog in project openmrs-core by openmrs.

the class PatientServiceTest method mergePatients_shouldAuditMovedIndependentObservations.

/**
 * @see PatientService#mergePatients(Patient,Patient)
 */
@Test
public void mergePatients_shouldAuditMovedIndependentObservations() throws Exception {
    // retrieve patients
    Patient preferred = patientService.getPatient(999);
    Patient notPreferred = patientService.getPatient(7);
    voidOrders(Collections.singleton(notPreferred));
    // get an observation for notPreferred and make it independent from any encounter
    Obs obs = Context.getObsService().getObs(7);
    obs.setEncounter(null);
    obs.setComment("this observation is for testing the merge");
    Context.getObsService().saveObs(obs, "Reason cannot be blank");
    // merge the two patients and retrieve the audit object
    PersonMergeLog audit = mergeAndRetrieveAudit(preferred, notPreferred);
    String uuid = null;
    List<Obs> observations = Context.getObsService().getObservationsByPerson(preferred);
    for (Obs o : observations) {
        if (obs.getComment().equals(o.getComment())) {
            uuid = o.getUuid();
        }
    }
    Assert.assertTrue("moving of independent observation was not audited", isValueInList(uuid, audit.getPersonMergeLogData().getMovedIndependentObservations()));
}

Example 29 with PersonMergeLog

use of org.openmrs.person.PersonMergeLog in project openmrs-core by openmrs.

the class PatientServiceTest method mergePatients_shouldAuditPriorCauseOfDeath.

/**
 * @see PatientService#mergePatients(Patient,Patient)
 */
@Test
public void mergePatients_shouldAuditPriorCauseOfDeath() throws Exception {
    // retrieve preferred patient and set a cause of death
    Patient preferred = patientService.getPatient(999);
    preferred.setCauseOfDeath(Context.getConceptService().getConcept(3));
    preferred.setDeathDate(new Date());
    preferred.setDead(true);
    preferred.addName(new PersonName("givenName", "middleName", "familyName"));
    patientService.savePatient(preferred);
    // merge with not preferred
    Patient notPreferred = patientService.getPatient(7);
    voidOrders(Collections.singleton(notPreferred));
    PersonMergeLog audit = mergeAndRetrieveAudit(preferred, notPreferred);
    Assert.assertEquals("prior cause of death was not audited", Context.getConceptService().getConcept(3).getUuid(), audit.getPersonMergeLogData().getPriorCauseOfDeath());
}

Example 30 with PersonMergeLog

use of org.openmrs.person.PersonMergeLog in project openmrs-core by openmrs.

the class PatientServiceTest method mergePatients_shouldAuditPriorDateOfDeathEstimated.

/**
 * @see PatientService#mergePatients(Patient,Patient)
 */
@Test
public void mergePatients_shouldAuditPriorDateOfDeathEstimated() throws Exception {
    // retrieve preferred patient and set a date of death
    GregorianCalendar cDate = new GregorianCalendar();
    cDate.setTime(new Date());
    Patient preferred = patientService.getPatient(999);
    preferred.setDeathDate(cDate.getTime());
    preferred.setDeathdateEstimated(true);
    preferred.setCauseOfDeath(Context.getConceptService().getConcept(3));
    preferred.addName(new PersonName("givenName", "middleName", "familyName"));
    patientService.savePatient(preferred);
    Patient notPreferred = patientService.getPatient(7);
    voidOrders(Collections.singleton(notPreferred));
    PersonMergeLog audit = mergeAndRetrieveAudit(preferred, notPreferred);
    Assert.assertTrue("prior estimated date of death was not audited", audit.getPersonMergeLogData().getPriorDateOfDeathEstimated());
}