Examples with Resource org.openrdf.model.Resource used on opensource projects

Example 46 with Resource

use of org.openrdf.model.Resource in project vcell by virtualcell.

the class VCMetaDataMiriamManager method setPrettyName.

public void setPrettyName(MiriamResource miriamResource, String prettyName) {
    ValueFactory valueFactory = vcMetaData.getRdfData().getValueFactory();
    Resource resource = valueFactory.createURI(miriamResource.getMiriamURN());
    Literal prettyNameLiteral = valueFactory.createLiteral(prettyName);
    vcMetaData.getRdfData().add(resource, ProtegeDC.description, prettyNameLiteral);
}

Example 47 with Resource

use of org.openrdf.model.Resource in project vcell by virtualcell.

the class VCMetaDataMiriamManager method getDublinCoreDateMap.

// this is not yet cached.
public Map<Identifiable, Map<DateQualifier, Set<DublinCoreDate>>> getDublinCoreDateMap() {
    Map<Identifiable, Map<DateQualifier, Set<DublinCoreDate>>> map = new HashMap<Identifiable, Map<DateQualifier, Set<DublinCoreDate>>>();
    Set<Entry> allEntries = vcMetaData.getRegistry().getAllEntries();
    Graph rdfData = vcMetaData.getRdfData();
    for (Entry entry : allEntries) {
        Resource resource = entry.getResource();
        if (resource != null) {
            Identifiable identifiable = entry.getIdentifiable();
            Map<DateQualifier, Set<DublinCoreDate>> qualifierDateMap = new HashMap<DateQualifier, Set<DublinCoreDate>>();
            for (DublinCoreQualifier.DateQualifier dateQualifier : AnnotationQualifiers.DC_date_all) {
                Set<DublinCoreDate> dateStrings = new HashSet<DublinCoreDate>();
                Iterator<Statement> stmtIter = rdfData.match(resource, dateQualifier.getProperty(), null);
                while (stmtIter.hasNext()) {
                    Statement statement = stmtIter.next();
                    Value dateObject = statement.getObject();
                    if (dateObject instanceof Literal) {
                        Literal dateLiteral = (Literal) dateObject;
                        String dateString = dateLiteral.stringValue();
                        dateStrings.add(new DublinCoreDate(dateString));
                    }
                }
                if (!dateStrings.isEmpty()) {
                    qualifierDateMap.put(dateQualifier, dateStrings);
                }
            }
            if (!qualifierDateMap.isEmpty()) {
                map.put(identifiable, qualifierDateMap);
            }
        }
    }
    return map;
}

Example 48 with Resource

use of org.openrdf.model.Resource in project vcell by virtualcell.

the class Registry method compareEquals.

public boolean compareEquals(Registry other) {
    Set<Resource> resSet = resourceToEntry.keySet();
    Set<Resource> otherResSet = other.resourceToEntry.keySet();
    if (!resSet.equals(otherResSet)) {
        return false;
    }
    for (Resource res : resSet) {
        Entry oe = resourceToEntry.get(res);
        Entry otherOe = other.resourceToEntry.get(res);
        final VCID vcid = identifiableProvider.getVCID(oe.getIdentifiable());
        final VCID otherVcid = other.identifiableProvider.getVCID(otherOe.getIdentifiable());
        if (!vcid.toASCIIString().equals(otherVcid.toASCIIString())) {
            return false;
        }
    }
    return true;
}

Example 49 with Resource

use of org.openrdf.model.Resource in project vcell by virtualcell.

the class OntologyInfo method writeHasObjectProperty.

public static void writeHasObjectProperty(Graph graph, PrintStream out, Resource resource, URI property, String intro) {
    Iterator<Statement> iter = graph.match(resource, property, null);
    Set<Resource> resources = new HashSet<Resource>();
    while (iter.hasNext()) {
        Value superClassNode = iter.next().getObject();
        if (superClassNode instanceof Resource) {
            resources.add((Resource) superClassNode);
        }
    }
    if (resources.size() > 0) {
        out.println("  " + intro + ": " + resourcesToString(resources));
    }
}

Example 50 with Resource

use of org.openrdf.model.Resource in project vcell by virtualcell.

the class OntologyInfo method resourcesToString.

public static String resourcesToString(Set<Resource> resources) {
    String string = "";
    boolean isFirst = true;
    for (Resource resource : resources) {
        if (resource instanceof URI) {
            URI uri = (URI) resource;
            String localName = uri.getLocalName();
            if (localName != null && localName != "") {
                if (isFirst) {
                    string = localName;
                    isFirst = false;
                } else {
                    string = string + ", " + localName;
                }
            }
        }
    }
    return string;
}