Examples with Email org.orcid.jaxb.model.message.Email used on opensource projects

Example 21 with Email

use of org.orcid.jaxb.model.message.Email in project ORCID-Source by ORCID.

the class VisibilityFilterImpl method filter.

/**
     * Remove the elements that are not present in the list of set of
     * {@link org.orcid.jaxb.model.message .Visibility}s present in the array
     * passed in.
     * 
     * @param messageToBeFiltered
     *            the {@link org.orcid.jaxb.model.message.OrcidMessage} that
     *            will be traversed looking for
     *            {@link org .orcid.jaxb.model.message.VisibilityType} elements.
     * @param source
     *            The orcid source that is executing the request
     * @param removeAttribute
     *            should all {@link org.orcid.jaxb.model.message.Visibility}
     *            elements be removed from the object graph. This has the effect
     *            that they will not be present in the resulting JAXB
     *            serialisation.
     * @param visibilities
     *            What {@link org.orcid.jaxb.model.message.Visibility} elements
     *            should be allowed.
     * @return the cleansed {@link org.orcid.jaxb.model.message.OrcidMessage}
     */
@Override
public OrcidMessage filter(OrcidMessage messageToBeFiltered, final String sourceId, final boolean allowPrivateWorks, final boolean allowPrivateFunding, final boolean allowPrivateAffiliations, Visibility... visibilities) {
    if (messageToBeFiltered == null || visibilities == null || visibilities.length == 0) {
        return null;
    }
    String messageIdForLog = getMessageIdForLog(messageToBeFiltered);
    LOGGER.debug("About to filter message: " + messageIdForLog);
    final Set<Visibility> visibilitySet = new HashSet<Visibility>(Arrays.asList(visibilities));
    if (visibilitySet.contains(Visibility.SYSTEM)) {
        return messageToBeFiltered;
    } else {
        TreeCleaner treeCleaner = new TreeCleaner();
        treeCleaner.clean(messageToBeFiltered, new TreeCleaningStrategy() {

            public TreeCleaningDecision needsStripping(Object obj) {
                TreeCleaningDecision decision = TreeCleaningDecision.DEFAULT;
                if (obj != null) {
                    Class<?> clazz = obj.getClass();
                    if (!PojoUtil.isEmpty(sourceId)) {
                        if (allowPrivateAffiliations && Affiliation.class.isAssignableFrom(clazz)) {
                            Affiliation affiliation = (Affiliation) obj;
                            Source source = affiliation.getSource();
                            if (source != null) {
                                String sourcePath = source.retrieveSourcePath();
                                if (sourcePath != null) {
                                    if (sourceId.equals(sourcePath)) {
                                        decision = TreeCleaningDecision.IGNORE;
                                    }
                                }
                            }
                        } else if (allowPrivateFunding && Funding.class.isAssignableFrom(clazz)) {
                            Funding funding = (Funding) obj;
                            Source source = funding.getSource();
                            if (source != null) {
                                String sourcePath = source.retrieveSourcePath();
                                if (sourcePath != null) {
                                    if (sourceId.equals(sourcePath)) {
                                        decision = TreeCleaningDecision.IGNORE;
                                    }
                                }
                            }
                        } else if (allowPrivateWorks && OrcidWork.class.isAssignableFrom(clazz)) {
                            OrcidWork work = (OrcidWork) obj;
                            Source source = work.getSource();
                            if (source != null) {
                                if (sourceId.equals(source.retrieveSourcePath())) {
                                    decision = TreeCleaningDecision.IGNORE;
                                }
                            }
                        }
                    }
                    // fields are inside the country element
                    if (Address.class.isAssignableFrom(clazz)) {
                        Address address = (Address) obj;
                        // Remove empty addresses
                        if (address.getCountry() == null) {
                            decision = TreeCleaningDecision.CLEANING_REQUIRED;
                        } else {
                            Country country = address.getCountry();
                            // Allow public addresses
                            if (Visibility.PUBLIC.equals(country.getVisibility())) {
                                decision = TreeCleaningDecision.IGNORE;
                            } else if (visibilitySet.contains(Visibility.LIMITED)) {
                                // Allow limited visibility when possible
                                if (Visibility.LIMITED.equals(country.getVisibility())) {
                                    decision = TreeCleaningDecision.IGNORE;
                                } else {
                                    // As last resource, check the source
                                    Source source = country.getSource();
                                    if (source != null && sourceId != null && sourceId.equals(source.retrieveSourcePath())) {
                                        decision = TreeCleaningDecision.IGNORE;
                                    } else {
                                        decision = TreeCleaningDecision.CLEANING_REQUIRED;
                                    }
                                }
                            }
                        }
                    }
                    if (Email.class.isAssignableFrom(clazz)) {
                        // include all emails if present
                        try {
                            Authentication authentication = getAuthentication();
                            if (authentication != null && messageToBeFiltered.getOrcidProfile() != null) {
                                permissionChecker.checkPermissions(getAuthentication(), ScopePathType.EMAIL_READ_PRIVATE, messageToBeFiltered.getOrcidProfile().retrieveOrcidPath());
                                decision = TreeCleaningDecision.IGNORE;
                            }
                        } catch (AccessControlException e) {
                        // private email can't be read, do nothing here
                        }
                    }
                    // that implements PrivateVisibleToSource
                    if (sourceId != null)
                        if (PrivateVisibleToSource.class.isAssignableFrom(clazz) && visibilitySet.contains(Visibility.LIMITED)) {
                            Source source = ((PrivateVisibleToSource) obj).getSource();
                            if (source != null) {
                                if (sourceId.equals(source.retrieveSourcePath())) {
                                    decision = TreeCleaningDecision.IGNORE;
                                }
                            }
                        }
                    if (TreeCleaningDecision.DEFAULT.equals(decision)) {
                        if (WorkContributors.class.isAssignableFrom(clazz)) {
                            decision = TreeCleaningDecision.IGNORE;
                        } else if (VisibilityType.class.isAssignableFrom(clazz)) {
                            VisibilityType visibilityType = (VisibilityType) obj;
                            if ((visibilityType.getVisibility() == null || !visibilitySet.contains(visibilityType.getVisibility()))) {
                                decision = TreeCleaningDecision.CLEANING_REQUIRED;
                            }
                        }
                    }
                }
                return decision;
            }
        });
        OrcidProfile orcidProfile = messageToBeFiltered.getOrcidProfile();
        if (orcidProfile != null) {
            orcidProfile.setOrcidInternal(null);
        }
        LOGGER.debug("Finished filtering message: " + messageIdForLog);
        return messageToBeFiltered;
    }
}

Example 22 with Email

use of org.orcid.jaxb.model.message.Email in project ORCID-Source by ORCID.

the class OrcidIndexManagerImplTest method getOrcidProfileMandatoryOnly.

/**
     * According to the validation rules on the web front end, these fields are
     * mandatory. Ultimately they may or may not make it into SOLR due to
     * visibility restrictions
     * 
     * @return OrcidProfile with only mandatory fields populated.
     */
private OrcidProfile getOrcidProfileMandatoryOnly() {
    OrcidProfile orcidProfile = new OrcidProfile();
    orcidProfile.setOrcidIdentifier("5678");
    OrcidBio orcidBio = new OrcidBio();
    orcidProfile.setOrcidBio(orcidBio);
    ContactDetails contactDetails = new ContactDetails();
    contactDetails.addOrReplacePrimaryEmail(new Email("stan@test.com"));
    orcidBio.setContactDetails(contactDetails);
    PersonalDetails personalDetails = new PersonalDetails();
    FamilyName familyName = new FamilyName("Logan");
    familyName.setVisibility(Visibility.PUBLIC);
    personalDetails.setFamilyName(familyName);
    GivenNames givenNames = new GivenNames("Donald Edward");
    givenNames.setVisibility(Visibility.PUBLIC);
    personalDetails.setGivenNames(givenNames);
    orcidBio.setPersonalDetails(personalDetails);
    OrcidActivities orcidActivities = new OrcidActivities();
    orcidProfile.setOrcidActivities(orcidActivities);
    Affiliations affiliations = new Affiliations();
    orcidActivities.setAffiliations(affiliations);
    return orcidProfile;
}

Example 23 with Email

use of org.orcid.jaxb.model.message.Email in project ORCID-Source by ORCID.

the class OrcidIndexManagerImplTest method getStandardOrcid.

private OrcidProfile getStandardOrcid() {
    OrcidProfile orcidProfile = new OrcidProfile();
    orcidProfile.setOrcidIdentifier("1234");
    OrcidBio orcidBio = new OrcidBio();
    ContactDetails contactDetails = new ContactDetails();
    Email email = new Email("email");
    email.setVisibility(Visibility.PUBLIC);
    contactDetails.addOrReplacePrimaryEmail(email);
    orcidBio.setContactDetails(contactDetails);
    Keywords bioKeywords = new Keywords();
    bioKeywords.getKeyword().add(new Keyword("Pavement Studies", Visibility.PUBLIC));
    bioKeywords.getKeyword().add(new Keyword("Advanced Tea Making", Visibility.PUBLIC));
    bioKeywords.setVisibility(Visibility.PUBLIC);
    orcidBio.setKeywords(bioKeywords);
    PersonalDetails personalDetails = new PersonalDetails();
    CreditName creditName = new CreditName("credit name");
    creditName.setVisibility(Visibility.PUBLIC);
    personalDetails.setCreditName(creditName);
    FamilyName familyName = new FamilyName("familyName");
    familyName.setVisibility(Visibility.PUBLIC);
    personalDetails.setFamilyName(familyName);
    OtherNames otherNames = new OtherNames();
    otherNames.setVisibility(Visibility.PUBLIC);
    otherNames.getOtherName().add(new OtherName("Other 1", Visibility.PUBLIC));
    otherNames.getOtherName().add(new OtherName("Other 2", Visibility.PUBLIC));
    personalDetails.setOtherNames(otherNames);
    GivenNames givenNames = new GivenNames("givenNames");
    givenNames.setVisibility(Visibility.PUBLIC);
    personalDetails.setGivenNames(givenNames);
    orcidBio.setPersonalDetails(personalDetails);
    ExternalIdentifiers externalIdentifiers = new ExternalIdentifiers();
    externalIdentifiers.setVisibility(Visibility.PUBLIC);
    orcidBio.setExternalIdentifiers(externalIdentifiers);
    ExternalIdentifier externalIdentifier1 = createExternalIdentifier("45678", "defghi");
    externalIdentifiers.getExternalIdentifier().add(externalIdentifier1);
    ExternalIdentifier externalIdentifier2 = createExternalIdentifier("54321", "abc123");
    externalIdentifiers.getExternalIdentifier().add(externalIdentifier2);
    OrcidActivities orcidActivities = new OrcidActivities();
    orcidProfile.setOrcidActivities(orcidActivities);
    Affiliations affiliations = new Affiliations();
    orcidActivities.setAffiliations(affiliations);
    FundingList fundings = new FundingList();
    orcidActivities.setFundings(fundings);
    OrcidWorks orcidWorks = new OrcidWorks();
    OrcidWork orcidWork1 = new OrcidWork();
    orcidWork1.setVisibility(Visibility.PUBLIC);
    OrcidWork orcidWork2 = new OrcidWork();
    orcidWork2.setVisibility(Visibility.PUBLIC);
    OrcidWork orcidWork3 = new OrcidWork();
    orcidWork3.setVisibility(Visibility.LIMITED);
    WorkTitle workTitle1 = new WorkTitle();
    Title title1 = new Title("Work title 1");
    workTitle1.setTitle(title1);
    workTitle1.setSubtitle(null);
    orcidWork1.setWorkTitle(workTitle1);
    WorkExternalIdentifier wei = new WorkExternalIdentifier();
    wei.setWorkExternalIdentifierId(new WorkExternalIdentifierId("work1-pmid"));
    wei.setWorkExternalIdentifierType(WorkExternalIdentifierType.PMID);
    orcidWork1.setWorkExternalIdentifiers(new WorkExternalIdentifiers(Arrays.asList(wei)));
    WorkTitle workTitle2 = new WorkTitle();
    Title title2 = new Title("Work title 2");
    workTitle2.setSubtitle(null);
    workTitle2.setTitle(title2);
    orcidWork2.setWorkTitle(workTitle2);
    WorkTitle workTitle3 = new WorkTitle();
    Title title3 = new Title("Work Title 3");
    workTitle3.setSubtitle(null);
    workTitle3.setTitle(title3);
    orcidWork3.setWorkTitle(workTitle3);
    orcidWorks.setOrcidWork(new ArrayList<OrcidWork>(Arrays.asList(new OrcidWork[] { orcidWork1, orcidWork2, orcidWork3 })));
    orcidProfile.setOrcidWorks(orcidWorks);
    orcidProfile.setOrcidBio(orcidBio);
    return orcidProfile;
}

Example 24 with Email

use of org.orcid.jaxb.model.message.Email in project ORCID-Source by ORCID.

the class BaseController method emailMatchesCurrentUser.

private boolean emailMatchesCurrentUser(String email) {
    OrcidProfileUserDetails currentUser = getCurrentUser();
    if (currentUser == null) {
        return false;
    }
    boolean match = false;
    for (Email cuEmail : getEffectiveProfile().getOrcidBio().getContactDetails().getEmail()) {
        if (cuEmail.getValue() != null && cuEmail.getValue().equalsIgnoreCase(email))
            match = true;
    }
    return match;
}

Example 25 with Email

use of org.orcid.jaxb.model.message.Email in project ORCID-Source by ORCID.

the class T2OrcidApiServiceVersionedDelegatorTest method testAttemptCreateWithTotallyIncorrectVersion.

@Test(expected = OrcidValidationException.class)
public void testAttemptCreateWithTotallyIncorrectVersion() {
    setUpSecurityContextForClientOnly();
    OrcidMessage orcidMessage = createStubOrcidMessage();
    orcidMessage.setMessageVersion("abc");
    Email email = new Email("madeupemail4@semantico.com");
    orcidMessage.getOrcidProfile().getOrcidBio().getContactDetails().getEmail().add(email);
    t2OrcidApiServiceDelegatorV2_1.createProfile(mockedUriInfo, orcidMessage);
}