Examples with Iso3166Country org.orcid.jaxb.model.message.Iso3166Country used on opensource projects

Example 1 with Iso3166Country

use of org.orcid.jaxb.model.message.Iso3166Country in project ORCID-Source by ORCID.

the class LoadFundRefData method findByDetails.

/**
     * DATABASE FUNCTIONS
     * */
/**
     * TODO
     * */
private OrgDisambiguatedEntity findByDetails(RDFOrganization org) {
    Iso3166Country country = StringUtils.isBlank(org.country) ? null : Iso3166Country.valueOf(org.country);
    // Find the org by name, city, country and state
    OrgDisambiguatedEntity existingEntity = orgDisambiguatedDao.findByNameCityRegionCountryAndSourceType(org.name, org.stateCode, org.stateCode, country, FUNDREF_SOURCE_TYPE);
    // If no match is found, try with the doi and source type
    if (existingEntity == null) {
        existingEntity = orgDisambiguatedDao.findBySourceIdAndSourceType(org.doi, FUNDREF_SOURCE_TYPE);
    }
    return existingEntity;
}

Example 2 with Iso3166Country

use of org.orcid.jaxb.model.message.Iso3166Country in project ORCID-Source by ORCID.

the class LoadGridData method execute.

public void execute() {
    Instant start = Instant.now();
    JsonNode rootNode = JsonUtils.read(fileToLoad);
    ArrayNode institutes = (ArrayNode) rootNode.get("institutes");
    institutes.forEach(institute -> {
        String sourceId = institute.get("id").isNull() ? null : institute.get("id").asText();
        // Case that should never happen
        if (PojoUtil.isEmpty(sourceId)) {
            LOGGER.error("Invalid institute with null id found {}", institute.toString());
        }
        String status = institute.get("status").isNull() ? null : institute.get("status").asText();
        if ("active".equals(status)) {
            String name = institute.get("name").isNull() ? null : institute.get("name").asText();
            StringJoiner sj = new StringJoiner(",");
            String orgType = null;
            if (!institute.get("types").isNull()) {
                ((ArrayNode) institute.get("types")).forEach(x -> sj.add(x.textValue()));
                orgType = sj.toString();
            }
            ArrayNode addresses = institute.get("addresses").isNull() ? null : (ArrayNode) institute.get("addresses");
            String city = null;
            String region = null;
            Iso3166Country country = null;
            if (addresses != null) {
                for (JsonNode address : addresses) {
                    if (addresses.size() == 1 || (address.get("primary") != null && address.get("primary").asBoolean())) {
                        city = address.get("city").isNull() ? null : address.get("city").asText();
                        region = address.get("state").isNull() ? null : address.get("state").asText();
                        String countryCode = address.get("country_code").isNull() ? null : address.get("country_code").asText();
                        country = StringUtils.isBlank(countryCode) ? null : Iso3166Country.fromValue(countryCode);
                    }
                }
            }
            ArrayNode urls = institute.get("links").isNull() ? null : (ArrayNode) institute.get("links");
            // Use the first URL
            String url = (urls != null && urls.size() > 0) ? urls.get(0).asText() : null;
            // Creates or updates an institute
            OrgDisambiguatedEntity entity = processInstitute(sourceId, name, country, city, region, url, orgType);
            // Creates external identifiers
            processExternalIdentifiers(entity, institute);
        } else if ("redirected".equals(status)) {
            String primaryId = institute.get("redirect").isNull() ? null : institute.get("redirect").asText();
            deprecateOrg(sourceId, primaryId);
        } else if ("obsolete".equals(status)) {
            obsoleteOrg(sourceId);
        } else {
            LOGGER.error("Illegal status '" + status + "' for institute " + sourceId);
        }
    });
    LOGGER.info("Updated orgs: {}", updatedOrgs);
    LOGGER.info("New orgs: {}", addedDisambiguatedOrgs);
    LOGGER.info("New external identifiers: {}", addedExternalIdentifiers);
    LOGGER.info("Updated external identifiers: {}", updatedExternalIdentifiers);
    LOGGER.info("Deprecated orgs: {}", deprecatedOrgs);
    LOGGER.info("Obsoleted orgs: {}", obsoletedOrgs);
    LOGGER.info("Time taken to process the data: {}", Duration.between(start, Instant.now()).toString());
}

Example 3 with Iso3166Country

use of org.orcid.jaxb.model.message.Iso3166Country in project ORCID-Source by ORCID.

the class LoadLEIData method processOrg.

/**
 * Add/Update Orgs in the DB
 *
 * @param org
 */
public void processOrg(LEIOrganization org) {
    Date now = new Date();
    OrgDisambiguatedEntity existingDO = orgDisambiguatedDao.findBySourceIdAndSourceType(org.id, LEI_SOURCE_TYPE);
    if (existingDO != null) {
        // update
        if (org.differentFrom(existingDO)) {
            existingDO.setCity(org.hqAddres.city);
            existingDO.setCountry(org.hqAddres.country);
            existingDO.setName(org.name);
            existingDO.setOrgType(org.type);
            existingDO.setRegion(org.hqAddres.region);
            existingDO.setUrl("https://www.gleif.org/lei/" + org.id);
            existingDO.setLastModified(now);
            existingDO.setIndexingStatus(IndexingStatus.PENDING);
            // Is it replaced?
            if (!PojoUtil.isEmpty(org.successorLEI)) {
                existingDO.setSourceParentId(org.successorLEI);
                existingDO.setStatus(OrganizationStatus.DEPRECATED.name());
            } else // or is is simply gone
            if ("INACTIVE".equals(org.status)) {
                existingDO.setStatus(OrganizationStatus.OBSOLETE.name());
            }
            LOGGER.info("Merging LEI:" + org.id);
            existingDO = orgDisambiguatedDao.merge(existingDO);
            updatedDisambiguatedOrgs++;
        }
    } else {
        // create
        Iso3166Country country = org.hqAddres.country;
        OrgDisambiguatedEntity orgDisambiguatedEntity = new OrgDisambiguatedEntity();
        orgDisambiguatedEntity.setName(org.name);
        orgDisambiguatedEntity.setCountry(country);
        orgDisambiguatedEntity.setCity(org.hqAddres.city);
        orgDisambiguatedEntity.setRegion(org.hqAddres.region);
        orgDisambiguatedEntity.setOrgType(org.type);
        orgDisambiguatedEntity.setSourceId(org.id);
        orgDisambiguatedEntity.setSourceUrl("https://www.gleif.org/lei/" + org.id);
        // Is it replaced?
        if (!PojoUtil.isEmpty(org.successorLEI)) {
            orgDisambiguatedEntity.setSourceParentId(org.successorLEI);
            orgDisambiguatedEntity.setStatus(OrganizationStatus.DEPRECATED.name());
        } else // or is is simply gone
        if ("INACTIVE".equals(org.status)) {
            orgDisambiguatedEntity.setStatus(OrganizationStatus.OBSOLETE.name());
        }
        orgDisambiguatedEntity.setSourceType(LEI_SOURCE_TYPE);
        LOGGER.info("Creating LEI:" + org.id);
        orgDisambiguatedDao.persist(orgDisambiguatedEntity);
        existingDO = orgDisambiguatedEntity;
        addedDisambiguatedOrgs++;
    }
    // Other names
    for (LEIOrganization otherOrg : org.toOtherOrgs()) {
        OrgEntity existingOrg = orgDao.findByAddressAndDisambiguatedOrg(otherOrg.name, otherOrg.hqAddres.city, otherOrg.hqAddres.region, otherOrg.hqAddres.country, existingDO);
        if (existingOrg != null) {
        // do nothing (nothing to update!)
        } else {
            OrgEntity newOrg = new OrgEntity();
            newOrg.setDateCreated(now);
            newOrg.setLastModified(now);
            newOrg.setCity(otherOrg.hqAddres.city);
            newOrg.setCountry(otherOrg.hqAddres.country);
            newOrg.setRegion(otherOrg.hqAddres.region);
            newOrg.setName(otherOrg.name);
            newOrg.setOrgDisambiguated(existingDO);
            LOGGER.info("Creating org LEI:" + org.id);
            orgDao.persist(newOrg);
            addedOrgs++;
        }
    }
}

Example 4 with Iso3166Country

use of org.orcid.jaxb.model.message.Iso3166Country in project ORCID-Source by ORCID.

the class LoadRinggoldData method generateOrganizations.

private void generateOrganizations(OrgDisambiguatedEntity disambiguatedEntity, List<JsonNode> altNames) {
    Date now = new Date();
    altNames.forEach(altName -> {
        String name = altName.get("name").asText();
        LOGGER.info("Processing organization {} for {}", name, disambiguatedEntity.getId());
        String city = altName.get("city").asText();
        Iso3166Country country = Iso3166Country.fromValue(altName.get("country").asText());
        // Not happy with line below.  Can steal from other ORG ID types.
        OrgEntity existingOrg = orgDao.findByNameCityRegionAndCountry(name, city, null, country);
        if (existingOrg != null) {
            if (existingOrg.getOrgDisambiguated() == null) {
                existingOrg.setOrgDisambiguated(disambiguatedEntity);
                existingOrg.setLastModified(now);
                orgDao.merge(existingOrg);
                numUpdatedOrgs++;
            }
        } else {
            OrgEntity newOrg = new OrgEntity();
            newOrg.setDateCreated(now);
            newOrg.setLastModified(now);
            newOrg.setCity(city);
            newOrg.setCountry(country);
            newOrg.setName(name);
            newOrg.setOrgDisambiguated(disambiguatedEntity);
            orgDao.persist(newOrg);
            numAddedOrgs++;
        }
    });
}

Example 5 with Iso3166Country

use of org.orcid.jaxb.model.message.Iso3166Country in project ORCID-Source by ORCID.

the class Jaxb2JpaAdapterImpl method setCountry.

private void setCountry(ProfileEntity profileEntity, ContactDetails contactDetails) {
    Country contactCountry = contactDetails.getAddress() != null && contactDetails.getAddress().getCountry() != null ? contactDetails.getAddress().getCountry() : null;
    Iso3166Country country = contactCountry != null ? contactCountry.getValue() : null;
    if (country != null) {
        Set<AddressEntity> addresses = profileEntity.getAddresses();
        if (addresses == null) {
            addresses = new HashSet<AddressEntity>();
            profileEntity.setAddresses(addresses);
        }
        boolean addIt = true;
        // If the address exists, don't add it
        for (AddressEntity address : addresses) {
            if (Objects.equals(country.value(), address.getIso2Country().value())) {
                addIt = false;
            }
        }
        if (addIt) {
            AddressEntity newAddress = new AddressEntity();
            newAddress.setDateCreated(new Date());
            // The default country is the smallest one, so, lets add this one as the biggest display index possible for the record
            newAddress.setIso2Country(org.orcid.jaxb.model.common_v2.Iso3166Country.fromValue(country.value()));
            newAddress.setLastModified(new Date());
            newAddress.setUser(profileEntity);
            newAddress.setVisibility(getDefaultVisibility(profileEntity, contactCountry.getVisibility(), OrcidVisibilityDefaults.COUNTRY_DEFAULT));
            // Set source
            SourceEntity source = sourceManager.retrieveSourceEntity();
            setSource(source, newAddress);
            newAddress.setDisplayIndex(0L);
            for (AddressEntity address : addresses) address.setDisplayIndex(address.getDisplayIndex() + 1L);
            addresses.add(newAddress);
        }
    }
}